Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01277 ATGACAGATCCTGCTCAGTCCAATTTATTCAGTGGACACTTCAACTTCATGACCCTCCAACACCCTCAGTACTACTACTCTTTCACTTCACAATCCAACTTGTCTTCCTCTTACCCTCTTCATGCTTATAATTCAAACAATAGATATTCCGTTCAATTCCCAACCTGCAATTCCTCCattcctcctcctccttctaATTCTTCTCTCCCTCTCAGAGAAGCTCTTCCTCTTATAAACCACTTAAGCATCAGTACAAACCAGCAAGCCATTGATGAGCTCTCGAAAAGTAAAGAGGAACTATCAGAGGACAATAAGAACATGAGCAATGAGgttgaagaagatgatgatgaaactGTGACCGTAGCTTTGTCCATAGGGCTTCCTAGCAAGAATTCTGATCTGGGTTCAAGGCAGATCTCAGCATCAGCTTCTGCAGAAATGGctgaaaaaaaggaaatgagtGTGGTTTCTGGACACCCTTTGGAGAGATTGAAAAAGGGTCAGTATTGGATTCCAACCCCTTCTCAGATTCTCATTGGCCCTACTCAGTTCTCATGCCCTGTGTGCTCCAAAACTTTCAACAGATACAATAATCTTCAGATGCACATGTGGGGACATGGATCTCAATATAGAAAAGGACCTGATTCGTTAAGGGGAGCTCAACCAACAGCCATGCTAAGGCTTCCATGCTTTTGTTGTGCACCAGGTTGCAAGCACAACATTGACCATCCAAGAGCCAAGCCTCTCAAAGACTTCAGAACCCTTCAAACACATTACAAGAGAAAGCATGGGATCAAACCCTACATGTGCAGAAAATGTAGCAAAGCTTTTGCAGTGAAAGGAGACTGGAGAACTCATGAGAAGAACTGTGGCAAAATATGGTATTGCCTTTGTGGGTCTGATTTCAAACACAAGAGGTCCTTAAAAGACCATGTTAAGTCCTTTGGCCATGGCCATGGCCATAGAGCTTTTGGCACTGATTGCTTgcaagaagatgatgaagcagAAGCAGCCTCTGAGATTGAGCATGATGGGGAGAACTCaatctg 1049 0.4032 MTDPAQSNLFSGHFNFMTLQHPQYYYSFTSQSNLSSSYPLHAYNSNNRYSVQFPTCNSSIPPPPSNSSLPLREALPLINHLSISTNQQAIDELSKSKEELSEDNKNMSNEVEEDDDETVTVALSIGLPSKNSDLGSRQISASASAEMAEKKEMSVVSGHPLERLKKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLRGAQPTAMLRLPCFCCAPGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPYMCRKCSKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHVKSFGHGHGHRAFGTDCLQEDDEAEAASEIEHDGENSI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01277 349 SMART c2h2final6 294 317 IPR013087 -
Bva09g01277 349 SMART c2h2final6 268 288 IPR013087 -
Bva09g01277 349 SMART c2h2final6 184 206 IPR013087 -
Bva09g01277 349 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 344 - -
Bva09g01277 349 Gene3D Classic Zinc Finger 245 324 - -
Bva09g01277 349 Coils Coil 83 117 - -
Bva09g01277 349 SUPERFAMILY beta-beta-alpha zinc fingers 178 206 IPR036236 -
Bva09g01277 349 SUPERFAMILY beta-beta-alpha zinc fingers 250 288 IPR036236 -
Bva09g01277 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Bva09g01277 349 PANTHER ZINC FINGER PROTEIN WIP2 1 344 IPR043584 GO:0003700|GO:0010468
Bva09g01277 349 MobiDBLite consensus disorder prediction 94 117 - -
Bva09g01277 349 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
Bva09g01277 349 Gene3D Classic Zinc Finger 183 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01277 Bva-Chr9 6902949 6905127 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01277 119 342 C2H2 Transcription Factor Family AT3G57670 64.961 3.21e-117 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bva09g01277 zf-C2H2_6 9.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01277 - - gmx:100799060 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01291 07 13640103 13642438 Bva09g01277 09 6902949 6905127 ECH
Bva09g01277 09 6902949 6905127 Bva09g01277 09 6902949 6905127 ECH