Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01275 ATGTCTGAGAGGGGTAATTGCAAGTTCTTTGCCCGTGGATCATGTTGGAAAGGAGAGCAATGTGAATATTCTCACGCCAGAAAAGATCCCCTAGTTGATGTTTGCAGATTCTATCAGAAAGGACTCTGTGCTTATGGTAGTCGATGCAGATATAAACACATCAAAGCTTCTCAAGAGGCACATCAATTTTCGGAGTCATCGTcaagaaatagaaacaaatCTCTGGCTTCAGATTCTATTGTGGCCGATACTACAAGAGGCACATCAAGTTGGGTTCAAAATGCTACAAAATCCTCGCCCTCTGATAAACCTGCAAGGAGTCTAGAACATAACTGGGATTCTCCGGTGAATGGTGATGTTGGTGAATCCAGTACTGCTATACCATCTGAGTATTCCTTTTGCACTTTTCCTGCTGCTAACTGCCccttagaagaaaaatgtaacCGTATCCATGGAGACCAGTGCCGATACTGTAGAAAGTACTGCTTGCATCCTAATCAACAtaatgagagagagaagcaTTTGCAGACTtgtgagaaaaaggaaaaatacctTCAGGCTTTGAAAGACATTCAAGAAATAGAATGCAATGTTTGCCTAGAGCGTGTTCTTTCAAAGCCTAGAGCAGCTGAACGTAAGTTTGGGCTGTTTCCTGAATGTGACCATGCTTTCTGTATATCCTGCATCAGGAATTGGCGCAGTAGTGCAACTAATGACCCAACTCATAGAATGGATCTTACTCGTACAGTGAAGGCCTGCCCAGTGTGCCGGAAGCAGTCATATTTTGTCATTCCGAGTCCTATCTGGTATTCTACGCAGGAAGAAAAGCAGGAAATCATTGAAAACTACAAGGCTAAGTGCAAGTTGATTGATTGCAAGCATTTTGACTCTGGAAATGGGAACTGTCCTTTTGGGACTAATTGTTTCTACAAGCATACTGTGAAGCCTGGCTCATACACATGGATACACCATAGGCCTCCTCCACGAAGAGGAAACAGGTTTAGTAAATACAACATGTTGGATATGCTCAGTGAATTTGATTTAGAAGGCGATGAATATTATTCCATCATGCGGGATTCAGAATTTTTGAGTGGCATGGATCCATTTGAGCTGATACCTTGGTCAGACATGCTGAGCTCTGGTTCAGGGCCGGGTCCTTTTGGACCGGATAATGAAGACGAAGATTCTGATGATGGAAACATTTTCCGAATGGCTGCTTTATCAGATGCATTGGTGGATGCTGGTATCGATGACGATTTTGATCCTGAAGAATCAGACGAAGAAATGAATCCCATGGAAGCAGCATTAATATCAATGATGCTGTCTAATGTTGCAGAAGAAATGCGTAACCGAGCAGACCAATA 1364 0.4076 MSERGNCKFFARGSCWKGEQCEYSHARKDPLVDVCRFYQKGLCAYGSRCRYKHIKASQEAHQFSESSSRNRNKSLASDSIVADTTRGTSSWVQNATKSSPSDKPARSLEHNWDSPVNGDVGESSTAIPSEYSFCTFPAANCPLEEKCNRIHGDQCRYCRKYCLHPNQHNEREKHLQTCEKKEKYLQALKDIQEIECNVCLERVLSKPRAAERKFGLFPECDHAFCISCIRNWRSSATNDPTHRMDLTRTVKACPVCRKQSYFVIPSPIWYSTQEEKQEIIENYKAKCKLIDCKHFDSGNGNCPFGTNCFYKHTVKPGSYTWIHHRPPPRRGNRFSKYNMLDMLSEFDLEGDEYYSIMRDSEFLSGMDPFELIPWSDMLSSGSGPGPFGPDNEDEDSDDGNIFRMAALSDALVDAGIDDDFDPEESDEEMNPMEAALISMMLSNVAEEMRNRADQ 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01275 454 CDD RING-HC_MKRN 196 257 - -
Bva09g01275 454 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 6 25 IPR000571 GO:0046872
Bva09g01275 454 PANTHER MAKORIN-RELATED 1 447 IPR045072 -
Bva09g01275 454 SUPERFAMILY RING/U-box 184 263 - -
Bva09g01275 454 SUPERFAMILY CCCH zinc finger 6 26 IPR036855 GO:0046872
Bva09g01275 454 SMART ring_2 196 256 IPR001841 -
Bva09g01275 454 ProSiteProfiles Zinc finger RING-type profile. 196 257 IPR001841 -
Bva09g01275 454 Gene3D - 2 71 - -
Bva09g01275 454 SMART c3hfinal6 2 27 IPR000571 GO:0046872
Bva09g01275 454 SMART c3hfinal6 286 314 IPR000571 GO:0046872
Bva09g01275 454 SMART c3hfinal6 29 55 IPR000571 GO:0046872
Bva09g01275 454 SMART c3hfinal6 130 153 IPR000571 GO:0046872
Bva09g01275 454 ProSiteProfiles Zinc finger C3H1-type profile. 286 315 IPR000571 GO:0046872
Bva09g01275 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 172 290 IPR013083 -
Bva09g01275 454 ProSiteProfiles Zinc finger C3H1-type profile. 1 28 IPR000571 GO:0046872
Bva09g01275 454 MobiDBLite consensus disorder prediction 60 79 - -
Bva09g01275 454 PANTHER MAKORIN RING-ZINC-FINGER PROTEIN 1 447 - -
Bva09g01275 454 MobiDBLite consensus disorder prediction 86 121 - -
Bva09g01275 454 MobiDBLite consensus disorder prediction 86 102 - -
Bva09g01275 454 Pfam CCCH-type zinc finger 34 53 IPR041367 -
Bva09g01275 454 Pfam Zinc finger, C3HC4 type (RING finger) 196 256 IPR018957 GO:0046872
Bva09g01275 454 SUPERFAMILY CCCH zinc finger 32 53 IPR036855 GO:0046872
Bva09g01275 454 MobiDBLite consensus disorder prediction 380 399 - -
Bva09g01275 454 ProSiteProfiles Zinc finger C3H1-type profile. 29 56 IPR000571 GO:0046872
Bva09g01275 454 ProSitePatterns Zinc finger RING-type signature. 220 229 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01275 Bva-Chr9 6895678 6898927 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva09g01275 zf-C3HC4 7.7e-07 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01275 K15687 - gmx:100788886 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g01275 09 6895678 6898927 Bva09g01275 09 6895678 6898927 ECH