Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01264 ATGAACCCAGAAATGGATTCAAGCATTGGCTATCATCAACAACACTGCCACCAACCTAATTCTGGACTGCTCCGGTACCGGTCCGCGCCGAGTTCATTTCTTGCAAGCCTTGTGGATAATGGCAGCCATGGCTGTGTGAATGAGGGAGCTTATAGCCAAAGAAGTGGTGAGGATGACAGTAACTATGTTCCTTCATCAAGTGCTGAAATGGAAACCATGTTGGCTAAACTCATTTCTTCTAACAATGGATGGAACAGCTCTGAATCCTTGGATGAGTATGGAGGGAAGCCTGTGAAGCAAGAAGCTGGGGAATCTGTTCCAACCCACAATGGTTATTCTGATGCTTCTCATATGATTTATCAGAATCAGCAAGTTCAAGTCTTGGCTGATGCTTCTTTGAGTGGTGGAAGTGCTTTTGATGCCTCATTTGGAGTCTCAGAGAACTCTAATGAATCCAAATTGATTTCAAGGAATTGCTCTAATCTCACCAGGCAGAAGAGCTCCCCAGCTGgatttttctccaatttgACAGCTGAAAATGGTTTTTCTGCATTGAAAGAAGGGGGAAGTTTTAGAGCATGTGATGTCACAAATGGACAATCTTCTGCATCAACTAGTGGGTTGAATGGTAACATGAAACTCTCTTCTTGCTCAAGGAGAATGCCTCAGATTgctgaaaatggaaatgaaagcATGGAAGCAGCAAGCTGTGTTGAAGGTAGAAAACTGCAAGGAAATGATAATGGCAGCAGCAAATGTTTCATGCCGAGCTTCACCAGTGACTTCTGGGACAATTCTGTATTCAATGGCCAAAAACCAGCAAGTGACAACGATGAAATCATGTTCTCAGATGCTTTGGAAACTCAGGATTCAGATTTTGGATACCAGAACCACCATGGTTTAACTCATCATTTGAGCTTGCCTAGTCCCTCTACCAAGATGACCATTGACAAGTTTTTGCAAGTTCAGGGATCTGTGCCTTGTAAAATTCGAGCCAAACGAGGTTTCGCGACTCATCCAAGAAGCATTGCAGAGAGGGTAAGAAGAACACGAATCAGTGAACGACTAAAGAAACTGCAAGATCTTTTCCCAAAATCAGACAAGCAAACAAGCACGGCAGATATGTTGGATTTGGCAGTTGATTACATTAAAGAACTGCAGAATCAAGTTCAgATGCTCACAGATACTAAGGCAAAGTGCACGTGTTCGAGTAATCAGAAGCAATATTCCAGAGCTAGTGTctg 1244 0.4172 MNPEMDSSIGYHQQHCHQPNSGLLRYRSAPSSFLASLVDNGSHGCVNEGAYSQRSGEDDSNYVPSSSAEMETMLAKLISSNNGWNSSESLDEYGGKPVKQEAGESVPTHNGYSDASHMIYQNQQVQVLADASLSGGSAFDASFGVSENSNESKLISRNCSNLTRQKSSPAGFFSNLTAENGFSALKEGGSFRACDVTNGQSSASTSGLNGNMKLSSCSRRMPQIAENGNESMEAASCVEGRKLQGNDNGSSKCFMPSFTSDFWDNSVFNGQKPASDNDEIMFSDALETQDSDFGYQNHHGLTHHLSLPSPSTKMTIDKFLQVQGSVPCKIRAKRGFATHPRSIAERVRRTRISERLKKLQDLFPKSDKQTSTADMLDLAVDYIKELQNQVQMLTDTKAKCTCSSNQKQYSRASV 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01264 414 Gene3D - 338 410 IPR036638 GO:0046983
Bva09g01264 414 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 400 IPR036638 GO:0046983
Bva09g01264 414 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 14 406 - -
Bva09g01264 414 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 336 386 IPR011598 GO:0046983
Bva09g01264 414 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 14 406 - -
Bva09g01264 414 MobiDBLite consensus disorder prediction 88 108 - -
Bva09g01264 414 SMART finulus 342 392 IPR011598 GO:0046983
Bva09g01264 414 Pfam Helix-loop-helix DNA-binding domain 342 387 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01264 Bva-Chr9 6834877 6837707 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01264 11 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 33.416 8.45e-49 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bva09g01264 HLH 2.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01264 - - gmx:100812802 503.056
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva07g01305 07 13702634 13705178 Bva09g01264 09 6834877 6837707 ECH
Bva09g01264 09 6834877 6837707 Bva09g01264 09 6834877 6837707 ECH