Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01258 ATGGCGCCGGCGAAGCAAAGAGCACCCAAGGTTAGCAGGAACCCTGAGCTTATTCGAGGGATTGGGAAGTACTCCCGATCAAAGATGTACCACAAGAGAGGTCTTTGGGCCATCAAGGCAAAGAGCGGTGGCAAGTTCCCACACCACGACCCCAATGCTATTCCTGAAGCGCCGGTTGAGAAGGCCCCCAAGTTTTACCCAGCTGATGATGTTAAGAAGCCTCTCATCAACAAGAGAAAGCCAAAACCCACCAAGCTCAGGCCTAGCATTACTCCTGGGACTGTTCTAATTCTTCTTGCTGGAAGATTCAAGGGAAAGAGAGTGGTGTTTCTGAAGCAGCTTTCTTCTGGCCTGCTTCTTGTTACTGGCCCATTCAAGATTAATGGAGTTCCATTGAGAAGAGTTAACCAGTCTTATGTCATTGGTACATCCACCAAGGTTGACATATCCGGTGTTAATGTGGATAAATTTGATGACAAATACTTTGCAAAGGAagttcagaaaaagaaaacaaagaccGAAGGCGAGTTCTTTGAGGCAGAGAAAGAGGAGAAGAATGTGCTCCCACAGGAGAAAAAAGATGATCAGAAGACTGTTGATGCTGCTTTGATTAAGGCCATTGAGAGTGTTCCAGACTTGAAGACATATTTGGGTGCAAGGTTTTCACTCAAGGCTGGCATGAAGCCCCATGAGCTACGCTTCTA 704 0.4531 MAPAKQRAPKVSRNPELIRGIGKYSRSKMYHKRGLWAIKAKSGGKFPHHDPNAIPEAPVEKAPKFYPADDVKKPLINKRKPKPTKLRPSITPGTVLILLAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVQKKKTKTEGEFFEAEKEEKNVLPQEKKDDQKTVDAALIKAIESVPDLKTYLGARFSLKAGMKPHELRF 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01258 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 - -
Bva09g01258 234 Pfam Ribosomal protein L6e 127 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Bva09g01258 234 PANTHER 60S RIBOSOMAL PROTEIN L6 1 234 IPR000915 GO:0003735|GO:0005840|GO:0006412
Bva09g01258 234 Gene3D - 88 173 IPR014722 -
Bva09g01258 234 SUPERFAMILY Translation proteins SH3-like domain 87 173 IPR008991 -
Bva09g01258 234 Coils Coil 163 183 - -
Bva09g01258 234 Pfam Ribosomal protein L6, N-terminal domain 4 45 IPR005568 GO:0003735|GO:0005840|GO:0006412
Bva09g01258 234 CDD KOW_RPL6 82 234 IPR041997 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01258 Bva-Chr9 6799292 6801124 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01258 3 234 Cytoplasmic Ribosomal Protein Gene Family AT1G74050 82.759 3.24e-125 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01258 K02934 - pvy:116113922 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g01258 09 6799292 6801124 Bva09g01258 09 6799292 6801124 ECH