Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01257 atgGCTTTGTACTCTTCGTTGCTCTCGCAACCCTATCTTCTTTCTAATCCCACAAAGTCCTTCACAACCCCATCCAATTTCTCCAATCACATTTTCAAAGTTACCCATTTACAACCCATTCTCAAATTGACGCCTTCTCTCTTAGTTACAAAACCCAGACGCTATCAGAGACCCTTTGCTGTAGCTGAAGAGACAGCAACAACCTCGGTAAACCCAAGTTCCGAGGCGGCGAGAAGGCTCTATATTGGCAACATTCCTCGCAATGTCAATAATTCTGAGCTTGCCAAGATTGTCGAAGAGCATGGTGCTGTCGAGAAAGCTGAGGTTATGTATGATAAATACTCTGGAAGGAGTCGTCGCTTCGCATTTGTTACCATGAAAACTGTTGAGGAAGCAAATGCTGCAATTGAGAAGCTAAATGGCTCTGAAATTGGAGGGCGTCAGATCAAAGTGAACATAACGGAAAAACCTTTGTCATCTGTAGATTTGTCCTTTCTCCAGGCGGAGGAATCTGAATTTGTTGACAGTCCTCACAAAGTTTATGTAGGAAATCTTGCAAAGACAGTAACATCAGACACACTTAAAACCTTTTTCTCTGAAAAGGGAAAGGTTCTTAGTGCCAAGGTTTCACGGGTTCCTGGGACTTCAAAATCCAGTGGGTTTGGCTTTGTTAGCTTCTCTTCCGATGAGGATGTAGAAGCCGCAATCTCATCTCTCAACAATGCTTTGTTAGAAGGGCAAAAAATTCGCGTGAATAAGGCATA 764 0.4293 MALYSSLLSQPYLLSNPTKSFTTPSNFSNHIFKVTHLQPILKLTPSLLVTKPRRYQRPFAVAEETATTSVNPSSEAARRLYIGNIPRNVNNSELAKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMKTVEEANAAIEKLNGSEIGGRQIKVNITEKPLSSVDLSFLQAEESEFVDSPHKVYVGNLAKTVTSDTLKTFFSEKGKVLSAKVSRVPGTSKSSGFGFVSFSSDEDVEAAISSLNNALLEGQKIRVNKA 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01257 254 PANTHER 30S RIBOSOMAL PROTEIN 2, CHLOROPLASTIC 1 254 - -
Bva09g01257 254 SUPERFAMILY RNA-binding domain, RBD 173 254 IPR035979 GO:0003676
Bva09g01257 254 Gene3D - 166 254 IPR012677 -
Bva09g01257 254 SMART rrm1_1 79 152 IPR000504 GO:0003723
Bva09g01257 254 SMART rrm1_1 179 252 IPR000504 GO:0003723
Bva09g01257 254 Gene3D - 51 160 IPR012677 -
Bva09g01257 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 178 254 IPR000504 GO:0003723
Bva09g01257 254 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 78 156 IPR000504 GO:0003723
Bva09g01257 254 SUPERFAMILY RNA-binding domain, RBD 70 156 IPR035979 GO:0003676
Bva09g01257 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 180 250 IPR000504 GO:0003723
Bva09g01257 254 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 80 150 IPR000504 GO:0003723
Bva09g01257 254 CDD RRM_HP0827_like 79 156 - -
Bva09g01257 254 PANTHER OS02G0815200 PROTEIN 1 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01257 Bva-Chr9 6796429 6798582 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01257 80 254 Eukaryotic Initiation Factors Gene Family AT2G23350 35.393 7.76e-21 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01257 K13126 - zju:107410340 348.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g01257 09 6796429 6798582 Bva09g01257 09 6796429 6798582 ECH