LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva09g01246	atgTGGAGATTCAAGCCATTCACGCATAAAGAACCAGCTGGGCTTGAAGGCCGTATTATAGATGTTGgcaatcttaaaataaatgtcCAGAAGGCCATTGCTGAAGGGGGTTTCTCTTGTGTCTACTTAGCTCGTGATGCTGTACATCTGTCAAAGCAATATGCTTTGAAGCACATAATATGCAATGATGAAGAATCACTTGAGTTAGTTAAGAAGGAGATCTCAGTGTTGAAGTCACTTAGAGGGCATCCCAATATTGTCACACTTTATGCACATACAATCTTTGATATGGGTAGGACGAAAGAGGCATTTCTTGTGATGGAATTTTGTGAAAAGTCTTTGGTTAATGTGCTGGAGAGCCGAGGATCTGgatattttgatgaaaatcaAGTTCTTTTAATCTTCAGGGATGTATGTAATGCAGTTTTCGCTATGCACTGTCAATCCCCACCTATTGCTCACAGAGACTTGAAAGCTGAGAATCTTCTATTAAGTTCAGATGGTTTGTGGAAGTTGTGTGATTTTGGTAGTACCTCCACCAATCATAAGCGTTTTGAGAAGCCAGAAGAAATGGGGATTGAGGAAGATAATATCAGGAAGTACACAACACCTGCCTACAGGGCCCCTGAGATGTGGGATCTGTTCCTGAGAGAACTCATCAATGAGAAAGTGGACATATGGGCTCTTGGGTGTCTTCTTTTTCGCATATGCTACTTCAAAAGTGCATTCGATGGAGAATCAAAGCTGCAGGTCTTAAATGGAAACTATCGGATTCCTGATTTACCCAAATACAGCTCATCTGTCACAGACTTAATCAGAGACATGCTTCAAGCTAAACCAGATGACAGACCAGATATCACGCAGGTTTGGTTTCGTGTTAATGAGCAACTTCCAAGTAATTTGCAGAAGTCGTTACCTGATAGACCACCTGAATTGGCTTCTTCCCACAATCATGAAGGTGCTTCAAAGCCTGCTCCTCGCAGGGCTGCACCTCCCCCACCTTCATCTGGAGAGCCTAAAAATACATCACCATCCCATCCTTCTAAGGGAGGGGGAAGTGCGGGCCAGCTTGGGGCTTTCTGGTCCACTGTGCATGCCAAGGACACACTTGTCCCTGAGAAGAGCAAACCCATATTTGATGAAGAATCATCTAGCAATCATAGTTCATCAAAACATGATAGGACTCATCCAAACAGTAATCAATTACCCAAAAGTGTTAGTACTAACAAAGTAACTAATGTCCAAACTCAAACTGTAAAAAGGAGTATATATGGAAAAACACAGAAACCCAATACTGGTTCTTCTAAGGAtggtgaaataaattttttccaaAAGGATATGGATCATCTTAATGAGAACAAAGCTACTTTTCAAGACCAGGCTTTTAACACTTTTGTTGCTGAGTTTGACAAGAAGCAGCTTAACTCTGGGTTCAGTGGTAAAAAATCTGAAAGGGAAGAAGCATTAGAGGCTGAGGTGGAAAAACTCAACGAGCAGCTTAAGGGAGTTAACGTGGAGAAAGCTGAAATAACTTCCAAGTATGAGAAGCTTTCCGCCATTTGCCGATCTCAGAGGCAGGAGATACAGGAGCTCAAGCAAGCACTCGCAGCAAGAAATCCATCACCAAATAGAGAGGGTCTGAGAACCTCTCCTGGATTTCCATCACCTGCATCAATGAGGGAGAAGGCTGGTGGAACAGTTGGAGAACACCGGCAAGCTAGAACTCCTAATTCAGAACCGAGGTCTTGGCAAGCCTTTTCCGAGGAACGGCAGCCGCAAAAGCCCCATTCGGCTGACAATACCACCAAATCTGTTAGGACTAGGAATGGTCAGCAGAAGAAGCCTGCTCCACAAACCACTGATTTTGATAATTGGGGTTTCGGAACAGATAGCTTTACTGCTGTAACTTCTGGCAGTCCACAGATACCAGTTCCTACTGCTGAAGGGAGCAATTCTCAGTCTTTTGGTGAGACAAAGACCTTTGAGAGCAACTCAGCTTCTCAACCTGCAGGATGGGCTGGTTTTTA	2027	0.4258	MWRFKPFTHKEPAGLEGRIIDVGNLKINVQKAIAEGGFSCVYLARDAVHLSKQYALKHIICNDEESLELVKKEISVLKSLRGHPNIVTLYAHTIFDMGRTKEAFLVMEFCEKSLVNVLESRGSGYFDENQVLLIFRDVCNAVFAMHCQSPPIAHRDLKAENLLLSSDGLWKLCDFGSTSTNHKRFEKPEEMGIEEDNIRKYTTPAYRAPEMWDLFLRELINEKVDIWALGCLLFRICYFKSAFDGESKLQVLNGNYRIPDLPKYSSSVTDLIRDMLQAKPDDRPDITQVWFRVNEQLPSNLQKSLPDRPPELASSHNHEGASKPAPRRAAPPPPSSGEPKNTSPSHPSKGGGSAGQLGAFWSTVHAKDTLVPEKSKPIFDEESSSNHSSSKHDRTHPNSNQLPKSVSTNKVTNVQTQTVKRSIYGKTQKPNTGSSKDGEINFFQKDMDHLNENKATFQDQAFNTFVAEFDKKQLNSGFSGKKSEREEALEAEVEKLNEQLKGVNVEKAEITSKYEKLSAICRSQRQEIQELKQALAARNPSPNREGLRTSPGFPSPASMREKAGGTVGEHRQARTPNSEPRSWQAFSEERQPQKPHSADNTTKSVRTRNGQQKKPAPQTTDFDNWGFGTDSFTAVTSGSPQIPVPTAEGSNSQSFGETKTFESNSASQPAGWAGF	675

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva09g01246	675	Gene3D	Transferase(Phosphotransferase) domain 1	11	306	-	-
	Bva09g01246	675	CDD	STKc_GAK_like	26	298	-	-
	Bva09g01246	675	MobiDBLite	consensus disorder prediction	571	675	-	-
	Bva09g01246	675	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	152	164	IPR008271	GO:0004672\|GO:0006468
	Bva09g01246	675	ProSiteProfiles	Protein kinase domain profile.	27	297	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva09g01246	675	PANTHER	SERINE/THREONINE PROTEIN KINASE	1	664	-	-
	Bva09g01246	675	Pfam	Protein kinase domain	29	289	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva09g01246	675	MobiDBLite	consensus disorder prediction	372	398	-	-
	Bva09g01246	675	MobiDBLite	consensus disorder prediction	399	439	-	-
	Bva09g01246	675	Coils	Coil	479	534	-	-
	Bva09g01246	675	MobiDBLite	consensus disorder prediction	372	439	-	-
	Bva09g01246	675	SUPERFAMILY	Protein kinase-like (PK-like)	28	336	IPR011009	-
	Bva09g01246	675	SMART	serkin_6	27	291	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva09g01246	675	MobiDBLite	consensus disorder prediction	326	340	-	-
	Bva09g01246	675	MobiDBLite	consensus disorder prediction	300	357	-	-
	Bva09g01246	675	Coils	Coil	440	460	-	-
	Bva09g01246	675	PANTHER	NUMB-ASSOCIATED KINASE, ISOFORM A	1	664	-	-
	Bva09g01246	675	MobiDBLite	consensus disorder prediction	531	675	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva09g01246	Bva-Chr9	6710661	6715228	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva09g01246	26	292	Miscellaneous Gene Families	AT2G34180	29.893	2.11e-21	96.3

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	NAK	Bva09g01246		Pkinase	1.6e-41	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva09g01246	K08853		-	gmx:100808507	960.674