Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01228 ATGGAGCTTGGTTTGAGTTTAGGAGAATCTTCGAAGCCATTTGAGTTCATGGAAAAGCCTCGCGAAGCTTCTAATCAATTGGAGTTAGGCTTCAACACCACCTTGTCGATTGGTCCAATTTCCAGAGAAAAAGATGAAccagaagaagaagcagaagaggaagaaaagaagaaagaaaacagaagcaATCGTAAAGACCATGAACTTCAGAGTCTCTCTCCCAAATCCAGCAATAACCCAGTTCAGCTTGATCTTCTTCCTCGCGCCCCTGTGGTCATAGCTCGTAACCCACTTTCCCAGCTTTCGTTCCCGTGGCCTCTTCCTTCAGAAAACGGGAGTTCAGCTGAGAATGGTTCTTCAAGGGGCTTGGACGTGAACAGGCTGCCGGCGGCAGCCATGGCGGAGGCAGAGGAAGGGGCGGCGGTGTCATCCTCCCCCAACAGCGCTGCATCATCGTTTCAGATGGATCTCTGCATATATAGCAGACGGGGGAGTTTCAGTGGGTCAGGGAACTATAACGGGAAGAGGGATCACTCTGATGACGAGGCTTATGATCAGAGGGCTTCTTCTAGAGCAAGTGATGAAGATGACAACGGTGGCAGCACAAGGAAGAAGCTCAGGCTCTCTAAAGAacaatcttcttttcttgaagAGAGCTTCAAAGAGCACAGTACTCTTAACCCAAAACAAAAGCTTGCTCTTGCAAAGCAGCTTAATCTCCGACCTCGCCAAGTAGAAGTTTGGTTCCAAAACAGAAGAGCAAGGACCAAGTTGAAGCAGACAGAAGTGGACTGTGAGTACTTGAAGAGGTGCTGTGAGACATTGACCGAAGAGAATAGAAGGCTTCACAAGGAGCTTCAAGAATTAAGAGCTTTGAAGACTTCAAACCCATTCTACATGCAATTACCGGCTACTACCTTGACCATGTGCCCTTCTTGTGAGAGGGTTGCCACCAATTCCACCAACACTTCCTCTACAACTCCTTCCACCACCGCCGCCGCCGCCAATACAGGCGGAGCTTTGACCACCACGGCCACCGCCAAAAACATTGACCCCACCTCCAAATCCATTGGATTCCCCTTTGGCAAACCCAGGTTTTATCCATTTGCTCACCCCTCCACAGCATCTTG 1130 0.4673 MELGLSLGESSKPFEFMEKPREASNQLELGFNTTLSIGPISREKDEPEEEAEEEEKKKENRSNRKDHELQSLSPKSSNNPVQLDLLPRAPVVIARNPLSQLSFPWPLPSENGSSAENGSSRGLDVNRLPAAAMAEAEEGAAVSSSPNSAASSFQMDLCIYSRRGSFSGSGNYNGKRDHSDDEAYDQRASSRASDEDDNGGSTRKKLRLSKEQSSFLEESFKEHSTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFYMQLPATTLTMCPSCERVATNSTNTSSTTPSTTAAAANTGGALTTTATAKNIDPTSKSIGFPFGKPRFYPFAHPSTAS 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01228 376 MobiDBLite consensus disorder prediction 318 337 - -
Bva09g01228 376 MobiDBLite consensus disorder prediction 54 71 - -
Bva09g01228 376 Pfam HD-ZIP protein N terminus 90 153 IPR006712 GO:0005634
Bva09g01228 376 ProSitePatterns 'Homeobox' domain signature. 234 257 IPR017970 GO:0000981|GO:0006355
Bva09g01228 376 SUPERFAMILY Homeodomain-like 191 260 IPR009057 -
Bva09g01228 376 Gene3D - 207 257 - -
Bva09g01228 376 MobiDBLite consensus disorder prediction 169 208 - -
Bva09g01228 376 Coils Coil 272 295 - -
Bva09g01228 376 Coils Coil 48 68 - -
Bva09g01228 376 Pfam Homeobox associated leucine zipper 259 293 IPR003106 GO:0006355|GO:0043565
Bva09g01228 376 Pfam Homeodomain 203 257 IPR001356 GO:0003677
Bva09g01228 376 ProSiteProfiles 'Homeobox' domain profile. 199 259 IPR001356 GO:0003677
Bva09g01228 376 SMART halz 259 302 IPR003106 GO:0006355|GO:0043565
Bva09g01228 376 PANTHER - 74 372 - -
Bva09g01228 376 MobiDBLite consensus disorder prediction 1 83 - -
Bva09g01228 376 PANTHER PROTEIN, PUTATIVE-RELATED 74 372 - -
Bva09g01228 376 CDD homeodomain 203 260 IPR001356 GO:0003677
Bva09g01228 376 MobiDBLite consensus disorder prediction 174 208 - -
Bva09g01228 376 SMART HOX_1 201 263 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01228 Bva-Chr9 6624107 6626305 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01228 71 317 Homeobox Transcription Factor Family AT5G47370 54.800 2.63e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bva09g01228 HD-ZIP_N 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01228 K09338 - gmx:100778742 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g01228 09 6624107 6626305 Bva09g01228 09 6624107 6626305 ECH