Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01227 ATGGAGCTTGATTTGAATCAAGAGCCTTTGGACCAAACTCGTACTCCAGCAAGGGGACTTGATTCTGTATTGAATGAATTAGAATCAGCGCATGAACATATAGTAGAACGTATTAGACATCTTGAAGCTGTAACCCATAGAGCTAGGCAGCGCCAGAGGTGGCGGCAGGGTCACAATAGCACCCCGGTTGAGATAAGCACTAGCAATACTGGAGGATTGGCAACAGCTAGTGTTCTAGATGAAGACACGGTACACCAGGGAGAGGATGGTGATGCTGTACAGGAAAGAGCAGTTGACGGTGGGAAATCAGCCAAAATGAGCAGTGCCTATTTAGTTGCCAGAGCATTGGAGATGGATACAGTCAGCGACACCAAGAAGGCAGAGAGCAGCAATAATGGAGGCTTTTATGATTGTAATATATGCTTGGACATGGCAAGAGACCCTATATTGACATGCTGTGGTCATTTGTTTTGTTGGCCATGCTTCTATCAGTTGTCACATTCCTATTCAAATGCAAGAGAATGCCCTGTTTGTAGAGGAGAGGTCACTGAAACAGGAATTATTCCAATTTATGGCAATGATACCGTCTCTAGCAGCCGTAAGTTGGAACTAGAAGAAGCTGGTTTAAGAGTACCGCCTAGGCCCAATGCACGTAGAATTGAGAGTTTCCGGCAGCAACTCATAAGCCGGAGAGCATCTTCTTCGGCAATCCAGGAAAGGATTCAGCAGTTCAGTAACTTGATTGGTGGAATAGGAGAGCGAGTTCAGTTAGTCAACCTTGAGCCTGCTGGTGATCGAACTCCCCGATTGCCTCGCACTTCTGCATCGTACGCATTATCCAGCATGGAAACAGAGAACAATCAGCATCCTCGTTCCCAGCAGCTTTCAAGATTGTTAATGCAAGGAGTTGCTTCCTTTTCATCCCTTTCATCAGCACTAAACTCAGCTATGGATTCTGCAGAAAGATTAGTCGAGGACCTGGAAACATATATTCATAATCACCATTCAGGAGGAAGCCGACAGCTAAACCCAGGCGCTGTTAATGAAGATTCACCCATAAACATTGTTACTACAACCGAAGCAGCAAGTAACTCTCCAGATGTTGTTGCTGCAACCGATTCAGTAACTGCGATTTCTGTTTCTCCTTTGAGTAGAAATGGAGCTGCTACTGCTGCCATAGGCTTAGAAATCCAAACAGATAGTGCTGCAGAGATTAGTCCAATGCACCTATCTTCCTCATCTTCCCGTAGAACTGATGTTTTAAGACTTCCAGACTCTGACAATCACAACGGAATTTCAAATGAGCCCAGAAGGAGAAGGCTAAGGTG 1328 0.4526 MELDLNQEPLDQTRTPARGLDSVLNELESAHEHIVERIRHLEAVTHRARQRQRWRQGHNSTPVEISTSNTGGLATASVLDEDTVHQGEDGDAVQERAVDGGKSAKMSSAYLVARALEMDTVSDTKKAESSNNGGFYDCNICLDMARDPILTCCGHLFCWPCFYQLSHSYSNARECPVCRGEVTETGIIPIYGNDTVSSSRKLELEEAGLRVPPRPNARRIESFRQQLISRRASSSAIQERIQQFSNLIGGIGERVQLVNLEPAGDRTPRLPRTSASYALSSMETENNQHPRSQQLSRLLMQGVASFSSLSSALNSAMDSAERLVEDLETYIHNHHSGGSRQLNPGAVNEDSPINIVTTTEAASNSPDVVAATDSVTAISVSPLSRNGAATAAIGLEIQTDSAAEISPMHLSSSSSRRTDVLRLPDSDNHNGISNEPRRRRLR 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01227 442 CDD RING-HC_AtRMA_like 136 180 - -
Bva09g01227 442 MobiDBLite consensus disorder prediction 404 419 - -
Bva09g01227 442 Pfam Zinc finger, C3HC4 type (RING finger) 137 184 - -
Bva09g01227 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 112 239 IPR013083 -
Bva09g01227 442 Coils Coil 24 44 - -
Bva09g01227 442 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 5 419 - -
Bva09g01227 442 SUPERFAMILY RING/U-box 137 184 - -
Bva09g01227 442 MobiDBLite consensus disorder prediction 404 442 - -
Bva09g01227 442 MobiDBLite consensus disorder prediction 49 70 - -
Bva09g01227 442 ProSiteProfiles Zinc finger RING-type profile. 138 179 IPR001841 -
Bva09g01227 442 SMART ring_2 138 178 IPR001841 -
Bva09g01227 442 MobiDBLite consensus disorder prediction 55 70 - -
Bva09g01227 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 5 419 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01227 Bva-Chr9 6612644 6614942 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01227 118 417 C3H Transcription Factor Family AT3G58030 34.320 1.08e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01227 K10666 - csv:101212429 365.925