Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01218 ATGGCCTCCGCCGCCGCCACCACAGCCGGGGCGGCGACGGAGCAAATTGAAACGAAGACTTATTGGTGCCACGAGTGTGATATGAGTGTAGCTCTGACTACATCTTCATCCTCGTCATCCCCTTCTACTCTCCTCTGCCCCCATTGTCACACCCACTTCCTCGAACTCATGGACTCTCCTCTCTTCTCTCAATCCGACACAGACCcacttctctcttctctttccctcTTCGACACCCCCTATCTCCATCGCCTGCTCCATCAACACCCCATTCCTTTCGACGAGTTCAACGACGACGACGATGGCGAAGCCGATGATGAAGTTGAAGACCCATTACCTTTGCTCTCCTCCCAAAACTCCATCTGCAGCTCCAAATTTCGCACAGATTCAATACCCACTATTTTGGTTACCTCTTCCTTGCTAGCAGAGCTGGACCCAAGTGGTGTTCTCTGTGCTGTTTGCAAGGACCCAATTTGCGTCGATGCAGAAGCAAAGCAGCTTCCTTGTAAGCATTTATACCACTCTGATTGCATTATTCCGTGGCTGGCACACCATAGTTCGTGCCCTCTTTGCCGGTTTCAGCTGGCTatagaagaagaggaaggggCAGCTCGGGCAAGGAGGATTAGGAGGCAATTGAGAACGGCGATGATGAGGCTTTCTGAATTGATGGAAGAGGATGATGATTTCTATGGATTTAGGACTACTTTGAGTCACATTGCTTATAGGCACGGTCTTGTGTCCTCTGCTACTTTGAACCCTTCCCTGTCTTTGTCGTCTACCCAGATGATTGAAGCTGAGACTATATCTGTGGGTGTCACTGATTATTTGGAGACTCTTTCGCGCTCTCCTGTTGAAAGAGGGTTACTGGGTTCGCCTGTGAGTGAACAAGGACAAGCTCAAGCAAGGTG 911 0.4797 MASAAATTAGAATEQIETKTYWCHECDMSVALTTSSSSSSPSTLLCPHCHTHFLELMDSPLFSQSDTDPLLSSLSLFDTPYLHRLLHQHPIPFDEFNDDDDGEADDEVEDPLPLLSSQNSICSSKFRTDSIPTILVTSSLLAELDPSGVLCAVCKDPICVDAEAKQLPCKHLYHSDCIIPWLAHHSSCPLCRFQLAIEEEEGAARARRIRRQLRTAMMRLSELMEEDDDFYGFRTTLSHIAYRHGLVSSATLNPSLSLSSTQMIEAETISVGVTDYLETLSRSPVERGLLGSPVSEQGQAQAR 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01218 303 Pfam Ring finger domain 151 192 IPR001841 -
Bva09g01218 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 19 271 - -
Bva09g01218 303 SMART ring_2 151 191 IPR001841 -
Bva09g01218 303 Coils Coil 206 226 - -
Bva09g01218 303 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE 19 271 - -
Bva09g01218 303 Pfam zinc-ribbon 20 57 IPR039525 GO:0061630
Bva09g01218 303 ProSiteProfiles Zinc finger RING-type profile. 151 192 IPR001841 -
Bva09g01218 303 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 197 IPR013083 -
Bva09g01218 303 SUPERFAMILY RING/U-box 141 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01218 Bva-Chr9 6568928 6571976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01218 17 229 C3H Transcription Factor Family AT3G60080 37.805 1.26e-32 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01218 K11982 - csin:114267674 202.986