Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01202 atggcAAATAAACTCTACGGCTACAGCCCTACGTACGGTGGTGGAGCAGCATCACCTTCATCTCCTGCTCCCACTGTCTCTGTCTCTACTACTTGTTCTCTCTATCTCGGCACCACGCGCTATCTTCCCTCCTATACAGGCGCCACCGCCGACATGTACCCACACCTAAGTGACGTTCTTCGGTATTCCTCTTACGCCGCTGCGGCGGACATTGACGTTGGCCCGCCTGGTGTGGCTTCCAAAACCTCCGGTGCCGTTGAACCGGCCTCTTCCTCCACCTCACATTTGCTATCTCAAGCCAATTGGCCAGCAGCCATAGCTGCTGCCACCGCTGCTGGTGGTTCTTCTGCACTCGACGCCGTTGTTGCCGGCTTAAAACGCTCTACCGAAGTGCTCTACCATCCAACCGTTTTGGGTACCCATAACACAATTGGGCAAAGTGAAGCTTGGTATTCTACAAACGCATTAACCAAGCGCCCTAGATACGAGAGTGCAAGCAATTTCCCTATATATCCACAGAGGCCAGGAGAGAAGGACTGTGCCTACTATATGCAAACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAGGGTGGAATCCCAAATTGGAAAGAGGTTCTACCTGTTGTTACGAGTGATTCTCTTCCTGAGAGACCGGGTGAACCAGATTGTCCTTTCTTTCTAAAAACTCAGAGATGCAAGTTTGGTTCAAGATGCAAGTTTAATCATCCGAAGGATAATTTTGCCAGTGTGGGTTCCTCTGAGAGTGGAGATGTTTCTGCCTTACCTGAGAGGCCATCTGAGCCTCCGTGTGCGTTCTTCATGAAAACTGGGATCTGTAAGTTTGGATCTGTCTGCAAATTCCATCACCCAAAAGATATCAAGGTTCAGTTGTCTGGACAGCCAAATGGTACTGGAGAACAGGCACAATTCATTACAATGATGGAAGGGACTTTAGGAGATGCAAAGGCAATTAGTCCTTTTATTTCATACACTCCTCCACTAACACATAATAGCAAAGGACTTCCTGTAAGACCGGGTGAAGTGGATTGTCCATTCTACATGAAAACTGGCAGTTGCAAGTATGCTGCTACTTGCCGCTACAATCATCCTGATTGGAGTGTAATTAATACGCCTGTGGCTGCATTAGGCCATTCTGTCTTGACACCCACGGCAGCTAATCTTAGTATTGGAATCGTTAATCCAGCTGCATCTTTATATCAAGCTATTGATCCCAGAATGTCAAGTTCAATGgTGGGAATAGGGCAAACTACCTATCCTCAACGACCTGGACAAATTGAATGCGATTACTATATGAAGACCGGGGAGTGTAAATATGGGGAAAGATGCAAGTATCATCACCCAATTGACCGATCAGTTAAACTCACTCTTGCAGGATTACCTAGAAGAGAGGGTGCCGCTGTCTGTCCGTACTATTTAAAAACCGGCACGTGTAAGTTCGGTGCGGCATGCAAGTTTGATCACCCACCTCCTGCAGAAGTTATGGAGAAGGTGAAGTTGCAAGGAACAGGAGAGCCGATTTCTGCAAATAAGCTTCGCAGGAGGAAGATTTGGAGGCTTAGAGCAACCCATTTAGATTTTGCTCTAGCTCTGCAGCAACACAGTCTCCGTTGCTGCCAAACCCAGATAAGGAAACCAAAATATGCTAGGATTTCAAGTATAAATGGGAGAACATATCCCTCGACCATTGAATTTCTTGTTCTGCTATGCTCTACAGGTTCATTCGTACAAGAAAATTGGAGCGGCAGGGATTA 1799 0.4664 MANKLYGYSPTYGGGAASPSSPAPTVSVSTTCSLYLGTTRYLPSYTGATADMYPHLSDVLRYSSYAAAADIDVGPPGVASKTSGAVEPASSSTSHLLSQANWPAAIAAATAAGGSSALDAVVAGLKRSTEVLYHPTVLGTHNTIGQSEAWYSTNALTKRPRYESASNFPIYPQRPGEKDCAYYMQTRTCKFGDSCKFDHPIWVPEGGIPNWKEVLPVVTSDSLPERPGEPDCPFFLKTQRCKFGSRCKFNHPKDNFASVGSSESGDVSALPERPSEPPCAFFMKTGICKFGSVCKFHHPKDIKVQLSGQPNGTGEQAQFITMMEGTLGDAKAISPFISYTPPLTHNSKGLPVRPGEVDCPFYMKTGSCKYAATCRYNHPDWSVINTPVAALGHSVLTPTAANLSIGIVNPAASLYQAIDPRMSSSMVGIGQTTYPQRPGQIECDYYMKTGECKYGERCKYHHPIDRSVKLTLAGLPRREGAAVCPYYLKTGTCKFGAACKFDHPPPAEVMEKVKLQGTGEPISANKLRRRKIWRLRATHLDFALALQQHSLRCCQTQIRKPKYARISSINGRTYPSTIEFLVLLCSTGSFVQENWSGRD 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01202 599 ProSiteProfiles Zinc finger C3H1-type profile. 437 465 IPR000571 GO:0046872
Bva09g01202 599 ProSiteProfiles Zinc finger C3H1-type profile. 273 301 IPR000571 GO:0046872
Bva09g01202 599 Gene3D - 271 386 - -
Bva09g01202 599 SUPERFAMILY CCCH zinc finger 277 300 IPR036855 GO:0046872
Bva09g01202 599 ProSiteProfiles Zinc finger C3H1-type profile. 478 506 IPR000571 GO:0046872
Bva09g01202 599 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 176 200 IPR000571 GO:0046872
Bva09g01202 599 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 276 300 IPR000571 GO:0046872
Bva09g01202 599 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 228 253 IPR000571 GO:0046872
Bva09g01202 599 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 482 505 IPR000571 GO:0046872
Bva09g01202 599 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 355 379 IPR000571 GO:0046872
Bva09g01202 599 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 440 463 IPR000571 GO:0046872
Bva09g01202 599 PANTHER CCCH ZINC FINGER/TIS11-RELATED 105 516 IPR045877 GO:0003729
Bva09g01202 599 SMART c3hfinal6 226 253 IPR000571 GO:0046872
Bva09g01202 599 SMART c3hfinal6 437 464 IPR000571 GO:0046872
Bva09g01202 599 SMART c3hfinal6 174 201 IPR000571 GO:0046872
Bva09g01202 599 SMART c3hfinal6 353 380 IPR000571 GO:0046872
Bva09g01202 599 SMART c3hfinal6 273 300 IPR000571 GO:0046872
Bva09g01202 599 SMART c3hfinal6 478 505 IPR000571 GO:0046872
Bva09g01202 599 Gene3D - 173 265 - -
Bva09g01202 599 Gene3D - 436 519 - -
Bva09g01202 599 ProSiteProfiles Zinc finger C3H1-type profile. 174 202 IPR000571 GO:0046872
Bva09g01202 599 ProSiteProfiles Zinc finger C3H1-type profile. 353 381 IPR000571 GO:0046872
Bva09g01202 599 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 37 105 516 - -
Bva09g01202 599 SUPERFAMILY CCCH zinc finger 440 465 IPR036855 GO:0046872
Bva09g01202 599 ProSiteProfiles Zinc finger C3H1-type profile. 226 254 IPR000571 GO:0046872
Bva09g01202 599 SUPERFAMILY CCCH zinc finger 482 505 IPR036855 GO:0046872
Bva09g01202 599 SUPERFAMILY CCCH zinc finger 175 201 IPR036855 GO:0046872
Bva09g01202 599 SUPERFAMILY CCCH zinc finger 231 255 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01202 Bva-Chr9 6464134 6474335 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01202 433 543 C2H2 Transcription Factor Family AT3G02830 41.379 2.98e-22 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva09g01202 zf-CCCH 3.3e-10 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01202 - - nnu:104599826 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g01202 09 6464134 6474335 Bva09g01202 09 6464134 6474335 ECH