Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01194 ATGGCCACCACCACAACCACCGCTGATGCTTCGCGCCAGCTTTCACAGAAGGAGGCTGACATCCAGATGATGTTGGCTGCCGAGGTTCACCTCGGTACCAAAAACTGTGACTTTCAGATGGAGCGCTACGTCTTCAAGCGCCGCAACGATGGTATTTACATAATCAACCTTGGCAAAACCTGGGAAAAGCTTCAACTTGCTGCCAGGGTTATTGTTGCAATTGAAAATCCTCAGGATATCATTGTTCAGTCTGCCAGGCCTTATGGTCAGAGAGCAGTTCTCAAGTTTGCCCAGTACACCGGTGCCCATGCAATTGCTGGAAGGCATACTCCTGGTACATTCACCAATCAGCTTCAGACATCATATAATGAGCCTCGCCTTCTCATTCTGACTGACCCAAGAACAGACCACCAGCCCATTAAGGAAGCTGCTCTTGGAAATATACCAACTATCGCTTTCTGTGACACTGATTCTCCAATGCGCTATGTTGACATTGGCATTCCTGCCAATAATAAGGGGAAGCATAGCATTGGTTGTCTCTTTTGGCTATTGGCCAGGATGGTACTGCAGATGAGGGGTACTATTCGTCCAGGGTTCAAATGGGATGTGATGGTGGATCTATTCTTCTATAGGGAACCCGAAGAGGCCAAGCAACAAGAGGAGGATGAAGTTCCTGCTGTACAAGATTATGCCATTGCGGACTTCGATGCCAGTGCTATTGGTGGCATTGCTGCTGATGGGCAGTGGCCTGCCGCAGCTGATCAACCCTGGACTGAGTCAGTTCCTCAACCAATTCCAGCAGTTCCTGCTGTCAGCTGGACTCCAGAGGCTGTTGCAGGAGATTGGGGCGAACCTGTTGCCGTTCCACCTCAAGTCCCTCCTCCCGGAATTGAAAATGTTCCTGCTACTGGCTGGGATTA 920 0.4989 MATTTTTADASRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSYNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGFKWDVMVDLFFYREPEEAKQQEEDEVPAVQDYAIADFDASAIGGIAADGQWPAAADQPWTESVPQPIPAVPAVSWTPEAVAGDWGEPVAVPPQVPPPGIENVPATGWD 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01194 306 CDD RPS2 24 190 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva09g01194 306 PANTHER 40S RIBOSOMAL PROTEIN SA 13 306 - -
Bva09g01194 306 SUPERFAMILY Ribosomal protein S2 16 206 IPR023591 -
Bva09g01194 306 ProSitePatterns Ribosomal protein S2 signature 2. 125 149 IPR018130 GO:0003735|GO:0005840|GO:0006412
Bva09g01194 306 ProSitePatterns Ribosomal protein S2 signature 1. 21 32 IPR018130 GO:0003735|GO:0005840|GO:0006412
Bva09g01194 306 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva09g01194 306 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva09g01194 306 PRINTS Ribosomal protein S2 signature 125 142 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva09g01194 306 PRINTS Ribosomal protein S2 signature 142 153 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva09g01194 306 PRINTS Ribosomal protein S2 signature 163 177 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva09g01194 306 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva09g01194 306 MobiDBLite consensus disorder prediction 283 306 - -
Bva09g01194 306 Hamap 40S ribosomal protein SA [rps-0]. 8 252 IPR027498 GO:0003735|GO:0006412|GO:0015935
Bva09g01194 306 TIGRFAM uS2_euk_arch: ribosomal protein uS2 16 212 IPR005707 GO:0003735|GO:0006412|GO:0015935
Bva09g01194 306 Pfam Ribosomal protein S2 24 119 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva09g01194 306 Pfam Ribosomal protein S2 121 188 IPR001865 GO:0003735|GO:0005840|GO:0006412
Bva09g01194 306 Gene3D - 20 225 - -
Bva09g01194 306 PANTHER 40S RIBOSOMAL PROTEIN SA 13 306 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01194 Bva-Chr9 6430479 6433082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01194 7 289 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 74.035 3.74e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01194 K02998 - gmx:548014 502.286