Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01174 ATGGGTCACCGGTGCTGCAGCAAACAGAAGATTAAAAGAGGGCTTTGGTCCCCTGAAGAAGATGAGAAGCTTATCAGACATATCACCGCCCATGGTCATAAAAGCTGGAGTTCTGTCTCAAAGCTCGCAGGGCTGCAGAGGTGTGGAAAGAGTTGCAGACTGAGATGGATAAACTATTTGAGACCAGACCTTAAGAGGGGTTCCTTCACTGCTGAAGAAGAGCAGACCATAATTGATGTTCATAGAATTTTGGGAAACAGATGGTCCCAAATAGCCAAGCATCTCCCAGGAAGGACAGACAACGAGGTCAAGAATTTCTGGAACTCCTGCATTAAGAAGAAACTCATCTCTCAAGGGTTAGACCCACAAACGCACACTCTCCTTTCTTCTCATAGGAGAGCCACTGATTGTAACATCTCAAAAATCCATCCAAATACCAACTCCATTTTCACTCTGAATTCACTAATACCAAATGCTGACAAGGCTCTCAAAGCTCAACCAGATTTAGTTCAAACAACTTCCCCCATTTTCTCCTCTGAATACCACCCCACTAGCATCATCTCCAATAATGTTCATGCTCATGATTCCCTTAATTTCTCAGATTTCCATTATTTACCCTCAATTGGGAACACAAACAATCTTTGTTCTTCTTCCTGCATCTACCCTTCATCTGCTGTTGGTTTGTCAGGCAATGAGAATTCTAACATTTGGGCTTCTAGTGCTGGAAACTTCAGAGCTCAAACACTTGAAGGAATGCAGGCACAAGTGCAGCAAGCGAAGGAGAAGACTTGTGAGAAGGGAACTGATGACGTCAGAGAATTAGCAAATAAAGGCAATCCTGAAATGAATGCTTCCTTTGATCATAGctctaattttgattttggtttgtTGGAGAATTTACTTGCTAGTGAATTTATGCCTCATGATCTCAGCTCTATGGATAACTTTGCATGGAACTTTTA 962 0.4158 MGHRCCSKQKIKRGLWSPEEDEKLIRHITAHGHKSWSSVSKLAGLQRCGKSCRLRWINYLRPDLKRGSFTAEEEQTIIDVHRILGNRWSQIAKHLPGRTDNEVKNFWNSCIKKKLISQGLDPQTHTLLSSHRRATDCNISKIHPNTNSIFTLNSLIPNADKALKAQPDLVQTTSPIFSSEYHPTSIISNNVHAHDSLNFSDFHYLPSIGNTNNLCSSSCIYPSSAVGLSGNENSNIWASSAGNFRAQTLEGMQAQVQQAKEKTCEKGTDDVRELANKGNPEMNASFDHSSNFDFGLLENLLASEFMPHDLSSMDNFAWNF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01174 320 CDD SANT 68 108 IPR001005 -
Bva09g01174 320 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Bva09g01174 320 CDD SANT 16 60 IPR001005 -
Bva09g01174 320 SMART sant 65 113 IPR001005 -
Bva09g01174 320 SMART sant 12 62 IPR001005 -
Bva09g01174 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Bva09g01174 320 PANTHER MYB DOMAIN PROTEIN 55 1 308 - -
Bva09g01174 320 Gene3D - 10 66 - -
Bva09g01174 320 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Bva09g01174 320 Gene3D - 68 115 - -
Bva09g01174 320 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Bva09g01174 320 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Bva09g01174 320 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Bva09g01174 320 PANTHER BNAC05G40480D PROTEIN 1 308 - -
Bva09g01174 320 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01174 Bva-Chr9 6276582 6278099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01174 1 133 MYB Transcription Factor Family AT3G12720 84.962 2.91e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva09g01174 Myb_DNA-binding 1.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01174 K09422 - gmx:100791209 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g01174 09 6276582 6278099 Bva09g01174 09 6276582 6278099 ECH