Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01140 ATGAATGCTCGGATTTGCAGCCAATGCCAGCCTTGTCAGCAACTCAATGCTACATGCCAATTTTACCCACTAAGAATTATACATCAAGGATCTCTTGTGGATAATATTAACCTAAAAGAGTTGCAGCCAGAACTTTCGAGGATGAAACCAGTCATTGGTAAAAATGAGAGGAATGCAGAAAATTTGGTGCAGAAACagcaacagaaaagaaaaaggagctATAAGCTGGAATCTAAAGAAAGTATTGATGACATACCAAGACGTGCTATTGGAAGAGATGGAcATTACTTTGTATGCATGAAGTGTGACTACGGCGGAAAGTTGCTTTGCTGTGATTCATGTGCATGCACTTATCATCTGCAGTGCCTCGATCCTCCTCTTTACTCCACTCCTAAAGGATATTGGCAATGCCCGAACTGCGATCACGATGATCTTTCAGAACCAAAAGCCAACCACAAGAGGCTTGCCTCCAACAACAGATCCTCAAATAGCAAAGAGGATGCCTCTTATACTTGTTCTATTTGTGCAAACACAGAAAAGATATTAGTGTTAACTGACGATGAATCTGATAAGCTGAAGTCCCCAGAATTCAACTCAAAGGTGGGAAATTTACCAATGGAAAACCAAGAAGGAACTTCAGTCCGTAATGCTGACAGTTGTGGAACTAGCACACAGAAATCTCCCGACAACGAGCCTGATAAGCTTTTAGTTTTAAGGGAAGCTTTGCCGGAGTCCATGAATGATATTGGCAAGTCAAAGCAACTCTCAAATCCTGCATCAATGGAACAAAAGCAAAGTTCTGATCAACAAGCATTTAGACACATGGAAAGTGCTCCCTTGTATAGATGGGGAGGTGCACGTGATCTCCTATCTTCAATGAGTCTGGGAGGCCAAGACATACCCATCTCAAATACTTCATTGCTTTCAAtgTTTTCATCTACAGTAATGGGAGAACCTCTGAGCTTCGGAGCAGGTACATCATCTGATGCCATGGTAGTTATCCCAACACCAAGAGGATTACTAAAATGGAAAGCACCAATAGTTTCTTGGTCAGAAGAGGAGCTAGATGCATTATGGGTTGGTGTCCGGAGATATGGTGCAGGTAATTGGGATGCCATCCTAGGAGATCCTTCTTTAAACTGCTTAAAGAATAAAACCCAGGAGGATCTATCCGCAAGGTGGAACAAGGATCTACGCAAATTCTTGGGTCCTGCACCAATCTCATCTATGCCAATCAGACCAAAACCACCTCTAAATGCTATGggctcttctttcttctgggCTCCCCAGTTGTCAGCAAACACCAACAGAGAGCCAGTGAATGGGGAACTCCTCCTGGGTGGTTATTTCCCACTTACAAATTTTggactaaataaaaatatgaatgcaGGTCATGGCTCTAGGGAGACTCACACTCTGCCAAAGCATGCTCCTTCTGACAATGTCTTGGTTGatgattataattatgatGCCGACATTGATGATGATAGTGATTATTCTTA 1502 0.4048 MNARICSQCQPCQQLNATCQFYPLRIIHQGSLVDNINLKELQPELSRMKPVIGKNERNAENLVQKQQQKRKRSYKLESKESIDDIPRRAIGRDGHYFVCMKCDYGGKLLCCDSCACTYHLQCLDPPLYSTPKGYWQCPNCDHDDLSEPKANHKRLASNNRSSNSKEDASYTCSICANTEKILVLTDDESDKLKSPEFNSKVGNLPMENQEGTSVRNADSCGTSTQKSPDNEPDKLLVLREALPESMNDIGKSKQLSNPASMEQKQSSDQQAFRHMESAPLYRWGGARDLLSSMSLGGQDIPISNTSLLSMFSSTVMGEPLSFGAGTSSDAMVVIPTPRGLLKWKAPIVSWSEEELDALWVGVRRYGAGNWDAILGDPSLNCLKNKTQEDLSARWNKDLRKFLGPAPISSMPIRPKPPLNAMGSSFFWAPQLSANTNREPVNGELLLGGYFPLTNFGLNKNMNAGHGSRETHTLPKHAPSDNVLVDDYNYDADIDDDSDYS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01140 500 Pfam Myb-like DNA-binding domain 349 396 IPR001005 -
Bva09g01140 500 Gene3D - 348 398 - -
Bva09g01140 500 MobiDBLite consensus disorder prediction 461 484 - -
Bva09g01140 500 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 320 418 - -
Bva09g01140 500 ProSiteProfiles Zinc finger PHD-type profile. 96 143 IPR019787 -
Bva09g01140 500 CDD PHD2_CHD_II 98 140 - -
Bva09g01140 500 SUPERFAMILY FYVE/PHD zinc finger 94 142 IPR011011 -
Bva09g01140 500 SMART PHD_3 98 141 IPR001965 -
Bva09g01140 500 Pfam PHD-finger 98 142 IPR019787 -
Bva09g01140 500 PANTHER PROTEIN CHROMATIN REMODELING 4 320 418 - -
Bva09g01140 500 MobiDBLite consensus disorder prediction 249 269 - -
Bva09g01140 500 Gene3D - 16 144 - -
Bva09g01140 500 SUPERFAMILY Homeodomain-like 348 400 IPR009057 -
Bva09g01140 500 ProSitePatterns Zinc finger PHD-type signature. 99 140 IPR019786 -
Bva09g01140 500 PANTHER PROTEIN CHROMATIN REMODELING 4 52 253 - -
Bva09g01140 500 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 52 253 - -
Bva09g01140 500 MobiDBLite consensus disorder prediction 192 233 - -
Bva09g01140 500 ProSiteProfiles Myb-like domain profile. 349 398 IPR001005 -
Bva09g01140 500 MobiDBLite consensus disorder prediction 248 269 - -
Bva09g01140 500 MobiDBLite consensus disorder prediction 201 230 - -
Bva09g01140 500 CDD SANT_TRF 350 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01140 Bva-Chr9 5983150 5987055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01140 98 140 PHD Transcription Factor Family AT4G14920 48.837 4.95e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva09g01140 Myb_DNA-binding 1.8e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01140 - - rcu:8259971 103.605