Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01129 ATGTCGGTGATGATTGTGACGAGTTTGGGAGACATAGTGATCGATTTGTACGCTGACAAATGCCCCCTAACGAGCAAGAATTTCTTGAAGCTTTGCAAGATTAAGTACTATAATGGATGCCTATTTCATACGGTTCAGAAGGATTTCACTGCTCAAACTGGTGATCCAACTGGAACAGGGACTGCTGGTGATTCAGTTTACAAATTTCTCTACGGTGATCAAGCTCGCTTTTTCAGTGATGAGATTAATATTGACTTGAAGCATTCTAAGACCGGTACCATTGCCATGGCTAGTGCGGGCGAAAATCTAAATGCTTCCCAGttctATATTACCCTGCGTGATGATCTTGATTACCTTGATGGGAAACATACTGTTTTTGGAGAGGTAGCTGAAGGATTTGAGACTTTGACTAGAATAAATGAGGCTTATGTGGATGAGAACGGGAGGCCATATAAAAACATCCGAATCAAGCACACATACATACTAGATGACCCTTTTGATGATCCTTCTCAGCTAACTGAGTTGATTCCTGATGCTTCACCAGAAGGAAAGCCAAAAGATGagGTTGAAGATGATGTGCGGCTTGAAGATGATTGGGTGCCTATGGATGAACAATTAGACCCCTCAGAGCTTGTAGAGGTTATAAGAGCAAAGGAAGCACATTCTCGGGCAGTTGTACTTGAGAGTATTGGGGATATTCCTGATGCTGAGATCAAGCCTCCTGAGAATGTTCTATTTGTCTGTAAATTGAATCCAGTTACTGAGGATGAAGACTTGCATACAATCTTTTCACGCTTTGGAACTGTATTGTCGGCTGAAGTCATCCGTGATTTTAAGACAGGAGACAGTTTATGTTATGCTTTCATTGAGTTTGAGGACCAAAAGTCATGCGAACAAGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAGAGTGTTGCAAAACTCTGGTCACAATATAGGCGCAATGGTCAGAAAGGTAAAGGTGGGGGTTGCTTCAAATGTGGTTCTCCTGATCATATCGCCAAGGATTGCACCGCTGATCCCATGATGAAAACACAGTTGACGAAGTTCATGTTGAAGGACACTAATGCCCAACATGGGGGAGACAATAAAAGCTATGAAATGGTTTTTGAAGACAATTCAGAAAGTCCAAGGGGAGAAATGAAACGTAGGGGCCATGACAAGCAAAGTTCTAAAGATCAAGAATTTGTTGGCTCAAACAACAGAGATAGGCATGGAGACAATAAAAGCTATGAAATGGTTTTTGAAGACAATTCAGAAAGTCCAAGGGGAGAAATGAAACGTAGAGGCCATGACAAGCAAAGTTCTAAAGATCAAGAATTTGTTGGCTCAAACAACAGAGATAGGCATGGTGACCGAAACAGAGGACAGGAGGAACACCGAGCAATTCGATCTGACAGAAGCTCACGGGATATGGATTCCCATGCAGAAAGGaaagatagagaaaaaaatgtggGAAGACATAGAGATGACGACCGTCGCTGGAAAGATGAGCTAGAATCTAGAAAGAGAAGGACAGACGACGAGTATTTAGAAAGACGTGACAGTGGAGATTATCGGAGAAAACCAGATTCTAGCCGCACAGAGAGGAGGGATGATGgagagaggagaaagaagacTAGTGCAATAGATGATGGCCATAGAGACAGGAAAGATGAAAGAGAGTACAGGAAGAGACATGAAGATAGTAGCAGGCAAAGGGACGAGTCacgaagaaggaaaagaagccCAGATGAAGATGAATACAGACACCGACGTGAACATAGAAGACGAGACACTGAATTCAATGATGATCGTCATAGGagatg 1859 0.4072 MSVMIVTSLGDIVIDLYADKCPLTSKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGTAGDSVYKFLYGDQARFFSDEINIDLKHSKTGTIAMASAGENLNASQFYITLRDDLDYLDGKHTVFGEVAEGFETLTRINEAYVDENGRPYKNIRIKHTYILDDPFDDPSQLTELIPDASPEGKPKDEVEDDVRLEDDWVPMDEQLDPSELVEVIRAKEAHSRAVVLESIGDIPDAEIKPPENVLFVCKLNPVTEDEDLHTIFSRFGTVLSAEVIRDFKTGDSLCYAFIEFEDQKSCEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRNGQKGKGGGCFKCGSPDHIAKDCTADPMMKTQLTKFMLKDTNAQHGGDNKSYEMVFEDNSESPRGEMKRRGHDKQSSKDQEFVGSNNRDRHGDNKSYEMVFEDNSESPRGEMKRRGHDKQSSKDQEFVGSNNRDRHGDRNRGQEEHRAIRSDRSSRDMDSHAERKDREKNVGRHRDDDRRWKDELESRKRRTDDEYLERRDSGDYRRKPDSSRTERRDDGERRKKTSAIDDGHRDRKDEREYRKRHEDSSRQRDESRRRKRSPDEDEYRHRREHRRRDTEFNDDRHRR 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01129 619 ProSiteProfiles Zinc finger CCHC-type profile. 341 354 IPR001878 GO:0003676|GO:0008270
Bva09g01129 619 Gene3D - 334 411 - -
Bva09g01129 619 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 511 IPR035542 -
Bva09g01129 619 Gene3D - 1 174 IPR029000 -
Bva09g01129 619 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Bva09g01129 619 CDD cyclophilin_RRM 4 169 IPR035538 -
Bva09g01129 619 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Bva09g01129 619 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Bva09g01129 619 SUPERFAMILY RNA-binding domain, RBD 229 340 IPR035979 GO:0003676
Bva09g01129 619 SUPERFAMILY Cyclophilin-like 1 177 IPR029000 -
Bva09g01129 619 MobiDBLite consensus disorder prediction 388 619 - -
Bva09g01129 619 Pfam Zinc knuckle 340 355 IPR001878 GO:0003676|GO:0008270
Bva09g01129 619 CDD RRM_PPIL4 240 322 - -
Bva09g01129 619 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Bva09g01129 619 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Bva09g01129 619 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Bva09g01129 619 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Bva09g01129 619 Gene3D - 182 324 IPR012677 -
Bva09g01129 619 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Bva09g01129 619 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Bva09g01129 619 SMART rrm1_1 244 317 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01129 Bva-Chr9 5935429 5940994 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01129 3 166 U-box Gene Family AT5G67530 39.024 4.52e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01129 K12735 - gmx:100776900 791.571