Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01121 ATGGTCAGAGGCAAGGTCAAGCTTCGACTCATTGCCGATGAATCAGCGAGGCGTGCTGCCTTCAGAAAGAGAACAAAGGGTCTGCTGAAGAAGTTAGATGAAGTTACCAAACTCTGCGATGTTGAGGCCTGTGCTATCATATATGGCCAAAACGAAGCTCAGCCAACCCTTTGGCCTTCCCCAGAAGGGTTCCAAGCTGTGATCCATAGGTTCATGGGAATGTCTGAGGTGGACCGGTCCAAGAAAATGTTGAACCTGGAGAGCTACCTTCAGGAGAGGCTCATCAAAACTCATGAGCAGATCAACAGGCTGTCCAGTGAGAATGAAGAGAAGCGACTGACCTTGATTATGTACGAGTACCTTGCTGCACAGAGGTTTGTGGAGAAACCAATGGATTTGGTGGATTTGGATGGGCTGATAAGGTTGCTTCACCAGAACATGGGGAACATCGCTCGAAGGATGGCAATGCTGAATGCGACTGGGACTCAAGGCGAGGCAAGCTCAAGTCACCCTCCTAATCAAAGTGGCTA 530 0.4943 MVRGKVKLRLIADESARRAAFRKRTKGLLKKLDEVTKLCDVEACAIIYGQNEAQPTLWPSPEGFQAVIHRFMGMSEVDRSKKMLNLESYLQERLIKTHEQINRLSSENEEKRLTLIMYEYLAAQRFVEKPMDLVDLDGLIRLLHQNMGNIARRMAMLNATGTQGEASSSHPPNQSG 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01121 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Bva09g01121 176 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Bva09g01121 176 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bva09g01121 176 CDD MADS_SRF_like 3 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bva09g01121 176 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bva09g01121 176 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bva09g01121 176 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bva09g01121 176 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 165 - -
Bva09g01121 176 SUPERFAMILY SRF-like 3 94 IPR036879 GO:0003677|GO:0046983
Bva09g01121 176 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 165 - -
Bva09g01121 176 ProSiteProfiles MADS-box domain profile. 1 51 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01121 Bva-Chr9 5875893 5876423 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01121 5 171 Type I MADS-box Gene Family AT1G65300 37.126 1.45e-32 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bva09g01121 SRF-TF 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01121 - - adu:107480964 150.984