LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva09g01118	ATGGTTAATAATCaacttctaattttctttcttgcgtTCTCATTCTTGTGGTTGTGGCCAAATGGCAATACATTAGGTGGCAATTTGAAGCCAGGTGATCTGCTGAATCAGACAGATGTTCTATGTTCGGCAAGTGGCAATTATTGTATGACATTTGCTGAATTTTCTGGTTCTGGCTTCACTTACTTGGTAATAATCGCGCAAACAGGTGACAGAGCAGTATGGATAGCCAACAGAAATGAACCCGCTGTCAACTTTTCTGTGGCTCTAACTTTGAATTATTCTGCAACGTTAAAGATAACACGACAAGACGAAGAGCCAATAATCCTCTACTCTTCAACTGAAGCCGCCAACATTACTTGTATCGCCAGCTTGTTTGACACTGGCAACTTTGTGCTTCAACAACTTTACCTTAATGGGTCTGTGAAGAGCATATTGTGGCAAAGTTTTGATAATCCCTCCCTCGGACTTGTGCAGGGCATGAAGTTAGGTGTTAATCACAAAACAGGCCAAAGTTGGTTACTTCAGTCATGTATAAGCAAAAATAGCCCAGCTTCAGGAGCCTTCACGCTTGAATGGGAACCCACAAGTGGCCAATTGATCATCCGAAGACGAGAGCAGATCTATTGGGGAAGTGGGAAGctgataaacaataaatttgaatacaTTTCGGGGCAGGTGCAGGACATGTATAATTACACCATTGTCTCAAATGAGAATGAAGATTCCTTCTCATACACaacaaaaaacaatgaatatTATTGGCAATTGTCTGATAGTGGCGAGCTGTTTGATAGCGAAGGAAATTCAATTGCAAGTGCGGATCAGTGTTATGGGTATAAGAGTGATGGAGGGTGTCAAACATGGAACATACCCAATTGTAGGCATGATGGTCAattcttttatgctttcatAGGTTACCTTGAGGGTAAATACAATGAAAGCTATGACAGAAATACGAGTTCAACCATGAGTGATTGCAAGGCTGCTTGCTGGAGCAACTGTGACTGCTTAGGATTTTCGAGTTACTTTGATAATTATACCGGATGTATCTTTTATAATGGAGACTCATGGGACGTCAAAAACCATGATGATGGGAATAGCTTTCTCATGATAAAGACAAAGTCATCGGAACACAAAGGTGTAAACAGATGGATTTGGGTTGGATCTGTGATAACTAGCCTTGCAGTCATACTTTGTGTAGGCATTCTGTGCATAGTAATACAGAGGAGAAGAAAAGaaaagaagaaaacaatggaCACCGATACTGGaagaaatttaagattatTCAGCTATGCATCTATCACGGAAGCTACTAATGACTTCTCATCTGAAAATAAGTTAGGAGAAGGGGGCTTCGGACCAGTTTATAAGGGGAAGTTGCAAATGAAGACTGAAGTAGCTATAAAGAGACTTTCAAGGAGTTCAAGACAAGGGatgattgaatttaaaaatgaattgagACTCATATCTGAACTTCAACATACAAATCTTGTTCAACTATTAGGTTACTGCATACATGGAAAGGagaatatcttaatttatgaatACATGCCTAACAAAAGTTTggactttttcttatttgATTCTTTCCAAAGCAGATTACTAGATTGGGAAAAACGTTTCAATATTATCGAAGGTGTAGCTCAAGGCTTACTCTATCTCCATAGATACTCTCGATTGAAAATAATACACAGAGACTTGAAAGCTAGTAATATATTGCttgatgaaaatatgaatCCTAAGATTTCAGATTTTGGTTTGGCGAGAATTTTCACTCAAGAGTTAGAAGAAAATAGTACTTCAATTGCTGGTACTCTTGGTTATATATCACCAGAGTGCATTATGCAACAAGTTTACTCTGTGAAATCAGATGTCTACAGTTttggagtcttaattcttgAAATTGTGAGCAGTAGAAGAAACAATTGTTTTGGAGCCTTAGTGAGACATGCATGGGAGCTTTGGAGAGATGGGGAGGGACTGAAGTTGCTGGATCCAGCAATAAATGACTCATCAGTCCATGATCAAATATTGAAATGCATTAATGTTGCCTTGTTATGCCTAGAAGAACTTGCAGTTAACAGGCCTACCATGTCTGAAATTCTATCAATGTTAACAAATGAATTTGCACCGCTTCCTCTGCCTCAAATGCCAGCATTTGACTTCGGAAGAAGGAACTATATTGAGGAAAATGAAACTCACGCAGAACATTATATTGATACAAGAAATGGCTTGACCATCTCAAGTATGTCTGCAAGGTA	2264	0.3635	MVNNQLLIFFLAFSFLWLWPNGNTLGGNLKPGDLLNQTDVLCSASGNYCMTFAEFSGSGFTYLVIIAQTGDRAVWIANRNEPAVNFSVALTLNYSATLKITRQDEEPIILYSSTEAANITCIASLFDTGNFVLQQLYLNGSVKSILWQSFDNPSLGLVQGMKLGVNHKTGQSWLLQSCISKNSPASGAFTLEWEPTSGQLIIRRREQIYWGSGKLINNKFEYISGQVQDMYNYTIVSNENEDSFSYTTKNNEYYWQLSDSGELFDSEGNSIASADQCYGYKSDGGCQTWNIPNCRHDGQFFYAFIGYLEGKYNESYDRNTSSTMSDCKAACWSNCDCLGFSSYFDNYTGCIFYNGDSWDVKNHDDGNSFLMIKTKSSEHKGVNRWIWVGSVITSLAVILCVGILCIVIQRRRKEKKKTMDTDTGRNLRLFSYASITEATNDFSSENKLGEGGFGPVYKGKLQMKTEVAIKRLSRSSRQGMIEFKNELRLISELQHTNLVQLLGYCIHGKENILIYEYMPNKSLDFFLFDSFQSRLLDWEKRFNIIEGVAQGLLYLHRYSRLKIIHRDLKASNILLDENMNPKISDFGLARIFTQELEENSTSIAGTLGYISPECIMQQVYSVKSDVYSFGVLILEIVSSRRNNCFGALVRHAWELWRDGEGLKLLDPAINDSSVHDQILKCINVALLCLEELAVNRPTMSEILSMLTNEFAPLPLPQMPAFDFGRRNYIEENETHAEHYIDTRNGLTISSMSAR	754

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva09g01118	754	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	563	575	IPR008271	GO:0004672\|GO:0006468
	Bva09g01118	754	Gene3D	Transferase(Phosphotransferase) domain 1	518	711	-	-
	Bva09g01118	754	SUPERFAMILY	alpha-D-mannose-specific plant lectins	73	173	IPR036426	-
	Bva09g01118	754	Pfam	Protein tyrosine and serine/threonine kinase	445	705	IPR001245	GO:0004672\|GO:0006468
	Bva09g01118	754	PIRSF	SRK	266	754	IPR024171	GO:0004674
	Bva09g01118	754	PIRSF	SRK	1	273	IPR024171	GO:0004674
	Bva09g01118	754	Pfam	PAN-like domain	314	359	IPR003609	-
	Bva09g01118	754	PANTHER	RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8	45	729	-	-
	Bva09g01118	754	PANTHER	CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN	45	729	-	-
	Bva09g01118	754	ProSiteProfiles	PAN/Apple domain profile.	294	376	IPR003609	-
	Bva09g01118	754	ProSiteProfiles	Bulb-type lectin domain profile.	26	146	IPR001480	-
	Bva09g01118	754	CDD	STKc_IRAK	448	708	-	-
	Bva09g01118	754	Gene3D	-	23	150	IPR036426	-
	Bva09g01118	754	SUPERFAMILY	Protein kinase-like (PK-like)	423	706	IPR011009	-
	Bva09g01118	754	Gene3D	Phosphorylase Kinase; domain 1	403	517	-	-
	Bva09g01118	754	Pfam	D-mannose binding lectin	74	177	IPR001480	-
	Bva09g01118	754	SMART	serkin_6	442	711	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva09g01118	754	SMART	blect_4	32	153	IPR001480	-
	Bva09g01118	754	ProSiteProfiles	Protein kinase domain profile.	442	711	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva09g01118	Bva-Chr9	5838460	5842353	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva09g01118	376	721	Receptor kinase-like Gene Family	AT4G05200	48.889	1.44e-111	352

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Bva09g01118		PK_Tyr_Ser-Thr	2.9e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva09g01118	-		-	vun:114168194	726.472