LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva09g01099	ATGATcaagttgaagttgaagatgaaaatggtgAAGTGTTCAACAGTGGTGGTGGGTTTTGCAGTTGCTGCTGTTTTAGTCTTCATGTTGTTGGTTAACTCAGCAGAAGCTCAACAAGCAAACCCTAAAACAGATCCTTCTGAAgCGAGAGCTTTGAATTCAATCTTCAACAAATGGGGGATATCAGCATCTACAGTACAATCAAATGGATGGAATGTAAGCGGCGATGTATGCAGCGGAACAGCCACCGATGACACCTTAATTGATGACACGAGTTACAACCCATTAATCAAATGCACTTGTTCCTTTAACAACGCCACTACTTGCCGCATCACAAAATTGAAGGTTTATGCTTTGGATGTGATCGGAAAAATCCCAGAAGAGCTATGGACTCTAACTTACCTCACCAatttGGATTTGCGCCAGAATTACTTGACAGGTTCTCTTCCTCCTGCAATTGGAAACCTTACTCTCATGCAATACTTGTCCTTTGGCATCAATGCCTTATCCGGGGAGCTTCCAAAGGAAGTCGGAAATCTTACCGAGTTAATATCCTTGAGTTTTGCGTCAAACAGATTCAATGGTTCTCTTCCATCTGAACTTGGGAAGCTGGTGAAATTAGAACAACTATACTTAACTAGTTCGGGAGTTAGTGGTCCAATTCCTTCAACATTtgcaaatctaaaaaatttggGCACCGTATGGGCTTCAGACACGGAATTGACAGGCAAGATACCTGACTTTATAGGGAACTGGACTAAGCTGACAGTCCTGAGGCTTCAGGGTAATTCTTTTGAAGGTTCAATACCCTCATCATTTTCCAATTTGACTTCTCTGACAGAGTTGAGAATAAGTCGTTTATCTAATGGGAGCTCCTCACTGGAATTTATAAGAAACATGAAGTCTTTGACTATCTTAGATCTGAGGAATACTAATATTTCTGGTGCAATTCCATCATATATTGGcgaattttcaaaattgatgCAGTTGGATTTAAGcttcaataatattataggAGAGATTCCAAGCTCGCTTTTTAACTTGAGTCAGCTTACTCATGTGTTTCTGGGAAATAACAAACTTTATGGTATCCTCCCTACTCAGAAAAGTGCCTCTCTTCAGAATATAGACTTGTCATACAACTACCTATCAGGGAGCTTTCCTTCTTGGGTCAACGAGCAAGATTTACAACTCAATTTAGTTGCCAACAACTTCACAATAGAAAGTTCAAATAGCAGTGGTTTGCCGTCTGGACTCAACTGTCTTCAGCGAAATTTTCCTTGCAATCGTGGCATTGGAAGATATTATAACTTTGCAATCAAGTGTGGTGGTCTTCAAATTACATCCTCAAATGGAGTAGTATATGAAATGGATAATGAGACACTTGGTCCTGCAACATATTTTGTTACTGATACACAGAGATGGGCTGTTAGCAATGTCGGAATATTTactgggaaaaaaaatcctcaatACAAAAGTTCTGTGTCTAATCAGTTCACTGCTACTTTGGACTCAGAACTCTTCCAGACAGCACGGCTATCTGCTTCATCCTTAAGATATTATGGACTGGGCCTGCAAAATGGTAACTACAACGTCACCCTCCAGTTTGCAGAGACAGCTATACTAGATACTGTTACCACATGGAAAAGTCTTGGGAGGAGAGTCTTTGACATTTATATCCAGGGGGAACGTGTTTTTAAGgattttgacataaaaaagGAAGCTGGGGGGGTCTCTTATAGAGCTGTCGAGAGAAAATTTAGGGCATTAGTGTCAGAAAACTATCTGGAGATCCATCTGTTTTGGGCTGGGAAAGGCACTTGCTGTATACCAGATCAAGGCACTTATGGTCCTCTGATTCAAGCTATCAGTGCAATCCCAGATTTCACTCCCACTGTTAGTAACAAAGCTCCAACAACTTCTAAGGACAGAACCGGTCTCATTGTGGGCATTTCTGTTGGTGTGGGAGTGGCATGTTTTCTGACTGTTTTCACATTTTTGTGTATTgttcaaagaagaaagcatcTAAGAGATGATGATGAAGAGCTCTCAGGTATTGATACAAAGCCAAATACTTTCAGCTATTCTGAGTTAAAGAATGCTACAGATGACTTTAATCTTGACAACAAGCTTGGAGAGGGAGGTTTTGGACCAGTTTATAAGGGGACACTCTATGATGGAAGAGTAGTTGCTGTGAAACAACTATCTGCAGGATCCCATCAAGGGAAAAGTCAATTCATAAATGAGATTGCTACTATATCTGCTGTGCAACATCGTAACCTTGTTAAGTTATATGGATGTTGCATTGAAGGAGATAAAAGACTTCTTGTCTATGAATATCTAGAAAACAAGAGTCTTGATCAAGCATTATTTGGAAATTGTTTAAATCTTGATTGGACTACACGCTATGATATTTGCTTGGGTGTAGCAAGAGGATTAGCATATCTTCATGAGGAGTCACGGCTCCGTATTGTGCATCGTGATGTGAAGGCTAGTAATATTCTGCTTGATCATGAGCTTATCCCTAAAATATCTGATTTTGGTTTGGCCAAATTATATGATGATAAGAAGTCCCATATAAGCACCCGTATAGCAGGGACAATTGGATATCTTGCACCGGAGTATGCCATGCGTGGCCATCTTACTGAGAAAGCAGATGTGTTTTCCTTTGGTGTTGTGGCTCTGGAGATAATCAGTGGCAGGCCTAATTCTGATTCAAGCTTAGAAGGAGAGAAGGTGTATCTTCTGGAATGGGCTTGGAATCTGTTTGAAAACAAATGTGTAATCGAGCTGGTAGATCCTAGGCTATCAGAATTTAATGAAGAAGAGGTGAAGAGAATTGCAGGGGTAGCTCTTTTGTGCACTCAAACATCTCCAGCATTACGACCATCAATGTCTCGTGTGGTGGCAATGCTCTCTGGAGACGTTGAAGTGAGCCCTGCAACTTCAAGGCCAGTATACTTAACTGACTGGAATTTTGATGATGTGACCAGCTTAATCACTGACCTTGCAACTAAAGGATCAGATACAAGTTATTACAAGTCATCATCAGCAAGTACCAATGTTGATATGGGCAGCACAGAGCTTTCACCGGTGAATCCTTCTAAACCAATTCTTGATAGGTCTCTTTA	3131	0.3909	MIKLKLKMKMVKCSTVVVGFAVAAVLVFMLLVNSAEAQQANPKTDPSEARALNSIFNKWGISASTVQSNGWNVSGDVCSGTATDDTLIDDTSYNPLIKCTCSFNNATTCRITKLKVYALDVIGKIPEELWTLTYLTNLDLRQNYLTGSLPPAIGNLTLMQYLSFGINALSGELPKEVGNLTELISLSFASNRFNGSLPSELGKLVKLEQLYLTSSGVSGPIPSTFANLKNLGTVWASDTELTGKIPDFIGNWTKLTVLRLQGNSFEGSIPSSFSNLTSLTELRISRLSNGSSSLEFIRNMKSLTILDLRNTNISGAIPSYIGEFSKLMQLDLSFNNIIGEIPSSLFNLSQLTHVFLGNNKLYGILPTQKSASLQNIDLSYNYLSGSFPSWVNEQDLQLNLVANNFTIESSNSSGLPSGLNCLQRNFPCNRGIGRYYNFAIKCGGLQITSSNGVVYEMDNETLGPATYFVTDTQRWAVSNVGIFTGKKNPQYKSSVSNQFTATLDSELFQTARLSASSLRYYGLGLQNGNYNVTLQFAETAILDTVTTWKSLGRRVFDIYIQGERVFKDFDIKKEAGGVSYRAVERKFRALVSENYLEIHLFWAGKGTCCIPDQGTYGPLIQAISAIPDFTPTVSNKAPTTSKDRTGLIVGISVGVGVACFLTVFTFLCIVQRRKHLRDDDEELSGIDTKPNTFSYSELKNATDDFNLDNKLGEGGFGPVYKGTLYDGRVVAVKQLSAGSHQGKSQFINEIATISAVQHRNLVKLYGCCIEGDKRLLVYEYLENKSLDQALFGNCLNLDWTTRYDICLGVARGLAYLHEESRLRIVHRDVKASNILLDHELIPKISDFGLAKLYDDKKSHISTRIAGTIGYLAPEYAMRGHLTEKADVFSFGVVALEIISGRPNSDSSLEGEKVYLLEWAWNLFENKCVIELVDPRLSEFNEEEVKRIAGVALLCTQTSPALRPSMSRVVAMLSGDVEVSPATSRPVYLTDWNFDDVTSLITDLATKGSDTSYYKSSSASTNVDMGSTELSPVNPSKPILDRSL	1043

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva09g01099	1043	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	149	1016	-	-
	Bva09g01099	1043	CDD	STKc_IRAK	711	972	-	-
	Bva09g01099	1043	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	824	836	IPR008271	GO:0004672\|GO:0006468
	Bva09g01099	1043	Gene3D	Phosphorylase Kinase; domain 1	676	780	-	-
	Bva09g01099	1043	Gene3D	Ribonuclease Inhibitor	45	288	IPR032675	-
	Bva09g01099	1043	ProSiteProfiles	Protein kinase domain profile.	705	987	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva09g01099	1043	Gene3D	Transferase(Phosphotransferase) domain 1	781	982	-	-
	Bva09g01099	1043	SUPERFAMILY	Protein kinase-like (PK-like)	687	998	IPR011009	-
	Bva09g01099	1043	Pfam	Leucine Rich Repeat	254	276	IPR001611	GO:0005515
	Bva09g01099	1043	Pfam	Malectin domain	437	623	IPR021720	-
	Bva09g01099	1043	Gene3D	-	435	627	-	-
	Bva09g01099	1043	SMART	serkin_6	705	972	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bva09g01099	1043	MobiDBLite	consensus disorder prediction	1012	1043	-	-
	Bva09g01099	1043	MobiDBLite	consensus disorder prediction	1012	1033	-	-
	Bva09g01099	1043	Gene3D	Ribonuclease Inhibitor	289	415	IPR032675	-
	Bva09g01099	1043	SUPERFAMILY	L domain-like	108	392	-	-
	Bva09g01099	1043	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	149	1016	-	-
	Bva09g01099	1043	Pfam	Leucine rich repeat	302	361	IPR001611	GO:0005515
	Bva09g01099	1043	Pfam	Protein tyrosine and serine/threonine kinase	706	972	IPR001245	GO:0004672\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva09g01099	Bva-Chr9	5643747	5653315	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva09g01099	116	289	Receptor kinase-like Gene Family	AT1G56120	26.437	6.14e-11	64.7

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Bva09g01099		PK_Tyr_Ser-Thr	3.5e-48	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva09g01099	-		-	lang:109352863	1540.78