Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01070 ATGGCGAAACCGGGGCGAGGTCGTCGCTCACCGCTGTTGGGCTCCGATTCAGCTTCCTCCTCTCGTTCTAGGTCCTCATCTCGCTCTCGTTCGCTTTCTCGGCCTGGGTCCCATTCGATGTCCCCATCTTCTTCGCGCTCTCTTTCTCGTTCCAGGTCCTTGTCTTCGTCGTCTTCTCGGTCCCGCAGTGTCAGTTCTCGGAGTCGGAGCCCTCGTCCTCAGAGGAGAAAAACTCCTGCTGAAGCAGTTAAGCGAGGACGGTCTCCCCCACCCCAGTCTAAAAGGACTTCTCCACCGCCAAGGAAACATTCTCCAGTTCGTGAGTCATTTGTTCTTCATGTAGACAAACTCAGCAGGAACATCAATGAAGGCCATCTGAGAGAAATATTCAGTAACTTTGGTGAGGTTGTGAATGTGGAGCTGGTTATGGATCGAGCTGTTAATCTTCCCAGAGGATATGGATATGTGGAGTTTAAGACAAAAGCAGATGCTGAAAAAGCCTTATTACATATGGATGGTGGTCAAATAGATGGGAATATCATTAAGGCAAGATTTACTCTACCACCAAGACAAAGGATTTCCCCACCCCCAATGGCATCAGCTGTTCCTCCAAAGAGAGATGCCCCAAGAACTGATAATGTCGGTGAAGATGCTGAAAGGGATGGCCCAAAACGGCTAAGAGAATTGGTAGCAGCTTCTCCTCAGAGGAAACCTTCCTCACCACGTAGGAGATCTCCTGGCCCTCGACGGGTTGGATCTCCAAGGCGGCCAGATTCTCCAGTTCGTCCACGTCGTCGATTGGACTCTCCATATCGTCGTGGGGACACACCTCCTAGGAGGAGGCCTTTGTCTCCTGCAAAAAGACGTTCTCCGTCTCCAGTAAGGCGGATCAGATCCCCTGCAAGGCTGCGAGGAAGTCCAGGTCGCAGACGTACACCTCCAAGGCGCCGTTCCCCATTCAGACGAGCTCGCAGTCCTCCTAGAAGGTCCCCTATTAGTCATAGACGCACTCGCTCTCCAATCCGTAGGCCTGCACGCTCACGTTCAAGGACCTTCTCACCACCACGAAGAGGTCGACCACCCGTAAGGCGAGGAAGCTCGTCATCCTACTCCAGTTCACCAAGTCCCCGGAAGGTATCGAGGAGATCAAGGAGTCGCAGCCCAAAAAGGCCTTTGAGAAGAAGAGGCGGtagcaacagcagcagcagcagctcACCACCCCCATCTCGCAAACCATA 1238 0.5194 MAKPGRGRRSPLLGSDSASSSRSRSSSRSRSLSRPGSHSMSPSSSRSLSRSRSLSSSSSRSRSVSSRSRSPRPQRRKTPAEAVKRGRSPPPQSKRTSPPPRKHSPVRESFVLHVDKLSRNINEGHLREIFSNFGEVVNVELVMDRAVNLPRGYGYVEFKTKADAEKALLHMDGGQIDGNIIKARFTLPPRQRISPPPMASAVPPKRDAPRTDNVGEDAERDGPKRLRESSPQRKPSSPRRRSPGPRRVGSPRRPDSPVRPRRRLDSPYRRGDTPPRRRPLSPAKRRSPSPVRRIRSPARLRGSPGRRRTPPRRRSPFRRARSPPRRSPISHRRTRSPIRRPARSRSRTFSPPRRGRPPVRRGSSSSYSSSPSPRKVSRRSRSRSPKRPLRRRGGSNSSSSSSPPPSRKP 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01070 409 MobiDBLite consensus disorder prediction 209 235 - -
Bva09g01070 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
Bva09g01070 409 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 1 394 - -
Bva09g01070 409 MobiDBLite consensus disorder prediction 186 409 - -
Bva09g01070 409 MobiDBLite consensus disorder prediction 299 350 - -
Bva09g01070 409 Gene3D - 13 194 IPR012677 -
Bva09g01070 409 MobiDBLite consensus disorder prediction 252 279 - -
Bva09g01070 409 MobiDBLite consensus disorder prediction 1 109 - -
Bva09g01070 409 MobiDBLite consensus disorder prediction 391 409 - -
Bva09g01070 409 MobiDBLite consensus disorder prediction 13 68 - -
Bva09g01070 409 CDD RRM_RNPS1 112 184 IPR034201 -
Bva09g01070 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 188 IPR000504 GO:0003723
Bva09g01070 409 SMART rrm1_1 111 184 IPR000504 GO:0003723
Bva09g01070 409 MobiDBLite consensus disorder prediction 361 375 - -
Bva09g01070 409 MobiDBLite consensus disorder prediction 376 390 - -
Bva09g01070 409 PANTHER BNAA09G56240D PROTEIN 1 394 - -
Bva09g01070 409 SUPERFAMILY RNA-binding domain, RBD 97 199 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01070 Bva-Chr9 5489350 5489700 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01070 112 185 Eukaryotic Initiation Factors Gene Family AT2G23350 32.432 1.15e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01070 K14325 - gmx:100783566 287.73