Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g01002 ATGGCGCACGTTAGCCAGCTCCCCCTCAACGCCGACGGTGTCTGTATGCTCTGCAAAGCCAAGCCGACGGAGGAGACGGAGAAGCTTATCTGCAAGACGTGCACTACACCGTGGCATTCGGCTTGCCTCGTTTCCCGGCCGGAGACGCTGGCGGAGGTACTTCAGTGGGAGTGTCCGGACTGCTCTGCTCCAGTCTCTGATCTCGCTCCGGTCGCTGCCAGTGATGCCCTGCTTGACGGCGCTGGTGGTGGTTCCAGCGAGTTATTAGCGGCGATTCGAGCTATCGAAGCTGATAATACACTCACAGAGCAGGAGAAGGCCCGCAAACGCCAACGTCTCATGAATGGAAAAGCCGCGTGTGAAGATGGGGATGACGACGATGAGAAAAGCGAGGAtgatgaagagaagaaagacgGAAATGGGGAAGGGAACGATATGCTGAATGTTTTAAGCGAGACCTTCAAATGCTCCTTCTGTATGCAGTTACCGGAGAGGCCAGTCACGACTCCATGTGGCCACAATTTCTGTTTGAAATGCTTCCAAAAATGGATAGGACAAGGGAAACAGACATGTGCGAAGTGCCGCAGCACCATTCCTCCGAAAATGTCAAGCCAGCCACGTATCAATTCTGCGCTTGTAGCTGCTATCCGAATGGCAAAGATCTCAAAAAGTGTTACTTCTGGAGAGCCTGCCAAGGTTTTTCACTGTCTGCATAACCAAGACAGGCCGGATACGGCATATACCACTGAGAGGGCACAAAAGACTGGGAAGGCAAATGCTGCTAGTGggaaaatttttgtaactGTGCCACAGGACCATTTTGGCCCAATCACGGCTGATTATGATCCAGTGCAAAATAGAGGCGTGCTTGTGGGTGATTCGTGGGAAGACAGGTTGGAATGTCGTCAGTGGGGTGCACACTTTCCACATGTTAGCGGCATCGCTGGTCAGTCTAATCATGGTGCACAATCAGTTGTTTTATCAGGAGGTTATGTAGACGACGAGGACCATGGCGAGTGGTTTCTCTATACCGGCAGTGGTGGTAGGGATTTAAGTGGCAACAAACGAACAAACAAGGAGCAATCTTTTGATCAGAAGTTTGAAAAGTCGAACAAGGCGCTTCAAGTTAGTTGTCTGAAGGGTTATCCTGTTCGAGTTGTGAGATCTCACAAAGAGAAGCGTTCGTCCTATGCCCCTGAGAAAGGATTGCGGTATGATGGTGTTTATAGAATTGAAAAGTGCTGGCAGAAAGTGGGATTGCAGgGTTTCAAGGTTTGCCGGTATTTGTTTATCAGATGTGATAATGAACCTGCTCCTTGGACTAGTGATGATCATGGCGATCGGCCTAGACCGTTACCAGTAATCTCAGAACTGAAGAAGGTTGACAAAGTatatgaaaggaaagaaacacCTTCTTGGGACTTTAATGAAAAAGACTCTCGTTGGAAGTGGAAGAAATCTCCACCTCTCAGCCAAAAACCGGTTAAAAGTGCCGATCCGAATGACATAGAAAGGGCAAGAAGGCAATTCAAGAAATCCCAAAATTTATCGGTCAGAGAAAAACTGCTTAGAGAATTCAGTTGCTCCATCTGCCGGCAGGTTATGATTTCACCAGTGACAACACCGTGTGCTCATAATTTCTGCAAGTCTTGTTTGGAAGCTAAATTCAAGGGTCAGAGTTTCGTGAAAGACAGAAGCAGGGGAGGAAGATCACTACGAACCCAGAAGAATGTGATGAAATGTCCTTTGTGCTGTCTTGACATAGCTGATTTTCTTCAGAACATTCAGGTTAATACAGAGCTGATGGGTTTGATTGAGTCGCTGAAAGCCAAggctgaagaagaaaatggtgaGCCAGTGGACTCAAGTGACGACGGCTGTGATGAAAACGGTGCAGAAAAGGATGATGAAAACAAAGCTTCAGATGAAGTTACGCAGGATCCTCTTATTGAGCCTGAGCAAAACAGCAGTGAAGAGAACAAAATTtctgaagagaagaagaacgGTTCAACTGAAGAGCTTGAAGTGGCCAATGAGGTGACAGTTGCCGAAGGGAAAcccaacaagaaaagaaagaaagctggAGAACAATGCCCAACAAGAGCTCGTGgtaaaaaagctaaaaaagtcaaaaaggcTAAGGAGGAAGGAGCAGATGAAGGAAATGATTCACCCTCAAGTCCTCTCCATTTGCCAGCAGACAATTG 2207 0.4481 MAHVSQLPLNADGVCMLCKAKPTEETEKLICKTCTTPWHSACLVSRPETLAEVLQWECPDCSAPVSDLAPVAASDALLDGAGGGSSELLAAIRAIEADNTLTEQEKARKRQRLMNGKAACEDGDDDDEKSEDDEEKKDGNGEGNDMLNVLSETFKCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKQTCAKCRSTIPPKMSSQPRINSALVAAIRMAKISKSVTSGEPAKVFHCLHNQDRPDTAYTTERAQKTGKANAASGKIFVTVPQDHFGPITADYDPVQNRGVLVGDSWEDRLECRQWGAHFPHVSGIAGQSNHGAQSVVLSGGYVDDEDHGEWFLYTGSGGRDLSGNKRTNKEQSFDQKFEKSNKALQVSCLKGYPVRVVRSHKEKRSSYAPEKGLRYDGVYRIEKCWQKVGLQGFKVCRYLFIRCDNEPAPWTSDDHGDRPRPLPVISELKKVDKVYERKETPSWDFNEKDSRWKWKKSPPLSQKPVKSADPNDIERARRQFKKSQNLSVREKLLREFSCSICRQVMISPVTTPCAHNFCKSCLEAKFKGQSFVKDRSRGGRSLRTQKNVMKCPLCCLDIADFLQNIQVNTELMGLIESLKAKAEEENGEPVDSSDDGCDENGAEKDDENKASDEVTQDPLIEPEQNSSEENKISEEKKNGSTEELEVANEVTVAEGKPNKKRKKAGEQCPTRARGKKAKKVKKAKEEGADEGNDSPSSPLHLPADN 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g01002 735 MobiDBLite consensus disorder prediction 684 703 - -
Bva09g01002 735 MobiDBLite consensus disorder prediction 103 123 - -
Bva09g01002 735 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 1 711 - -
Bva09g01002 735 SUPERFAMILY PUA domain-like 258 453 IPR015947 -
Bva09g01002 735 SMART PHD_3 14 62 IPR001965 -
Bva09g01002 735 SMART ring_2 156 194 IPR001841 -
Bva09g01002 735 SMART ring_2 528 584 IPR001841 -
Bva09g01002 735 SMART ring_2 15 61 IPR001841 -
Bva09g01002 735 ProSitePatterns Zinc finger RING-type signature. 543 552 IPR017907 -
Bva09g01002 735 SUPERFAMILY RING/U-box 521 610 - -
Bva09g01002 735 ProSitePatterns Zinc finger PHD-type signature. 15 61 IPR019786 -
Bva09g01002 735 SUPERFAMILY FYVE/PHD zinc finger 8 67 IPR011011 -
Bva09g01002 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 73 IPR013083 -
Bva09g01002 735 Pfam RING-type zinc-finger 528 568 IPR027370 -
Bva09g01002 735 ProSiteProfiles Zinc finger RING-type profile. 156 195 IPR001841 -
Bva09g01002 735 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 711 IPR045134 -
Bva09g01002 735 MobiDBLite consensus disorder prediction 632 646 - -
Bva09g01002 735 SMART G9a_1 279 436 IPR003105 -
Bva09g01002 735 Pfam Zinc finger, C3HC4 type (RING finger) 156 194 IPR018957 GO:0046872
Bva09g01002 735 Gene3D - 255 453 IPR036987 -
Bva09g01002 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 101 223 IPR013083 -
Bva09g01002 735 Coils Coil 598 618 - -
Bva09g01002 735 CDD RING-HC 156 194 - -
Bva09g01002 735 ProSiteProfiles YDG domain profile. 284 432 IPR003105 -
Bva09g01002 735 SUPERFAMILY RING/U-box 147 218 - -
Bva09g01002 735 MobiDBLite consensus disorder prediction 657 673 - -
Bva09g01002 735 Pfam SAD/SRA domain 286 435 IPR003105 -
Bva09g01002 735 ProSiteProfiles Zinc finger RING-type profile. 528 584 IPR001841 -
Bva09g01002 735 MobiDBLite consensus disorder prediction 103 145 - -
Bva09g01002 735 MobiDBLite consensus disorder prediction 612 735 - -
Bva09g01002 735 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 625 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g01002 Bva-Chr9 5117658 5122238 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g01002 1 615 C2H2 Transcription Factor Family AT5G39550 60.841 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g01002 K10638 - jre:109003133 947.962