Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00987 ATGGATGCCAGATTCCATGGCTTACCTCTTCTGAAACGATTGATAATCATCCaacaagaagaacaaaagcttcaacagcaacagcagcagcaaagACCCTTACCCACAAAGAAGCGGAAGGAGACGCGGGACTCAACATTTCTGCCATACCCACCAGTTTCTACCTCTGCCACTGCTTACTCTTTGCCAGCTAAGAAAAGGGTATGGGCGCCTCAACCTGAATCTACTCCCACTTTAGCTGTTTCCGAATCTCTCTTTGATCTCAATGTTGAATATAAACCATCTGTTGAGGAAGTGATTAACCCAATAGATTGTGAACCCAATAACGAGATCCAAGTTGTAGCAGATTCTATTGATCAATCTATTCAAAACCCCCAAGATGAAAAGGAGGAAGATAGAGGTGAAGAGATTGATGGTGATGACGATGATGGGATTGTATGTGCCGTATGTGAAAGCACAGATGGTGACCCCACGGATCCAATTGTTTTCTGTGATGGGTGTGATTTAATGGTGCACGCCAGTTGCTATGGCAATCCCCTTGTAAAGGGTGTACCAGAAGGTGATTGGTTTTGTAATCAGTGCTTGGCTCGCTCGTCTGCTAAATCTAAGAAGGGCGAAAAGGGTTTTTCTTGCTGCCTCTGCCCTGTCAAGGAAGGGGCAATGAAACCTACAACGGATGGGAAGTGGGCGCATATTGTCTGTGCGCTTTTAGTCCCTGAGGTGTTTTTTGGGGACCCAGAAGGCAGAGAGGGAATTGATTGTTCTCAGGTTCCCAATAAGAGATTGTTGGAGAAATGTTACATTTGCAATTCTTTGAATGGGTGTGCTATTGTGTGCTCCGAGTCAAAATGCCCTTTAGCTTTCCATGTTACTTGTGGATTGAAAGAGGATCTTAGCATTGAGtacaaagaagagaagagtgcTACTATTGTTGCTGGTTTCTGCAAAACCCACACTGAAATATGGaaaaagCAACAGCAATCTgggaaatataaaatagttgcTGCCCATTA 1013 0.4067 MDARFHGLPLLKRLIIIQQEEQKLQQQQQQQRPLPTKKRKETRDSTFLPYPPVSTSATAYSLPAKKRVWAPQPESTPTLAVSESLFDLNVEYKPSVEEVINPIDCEPNNEIQVVADSIDQSIQNPQDEKEEDRGEEIDGDDDDGIVCAVCESTDGDPTDPIVFCDGCDLMVHASCYGNPLVKGVPEGDWFCNQCLARSSAKSKKGEKGFSCCLCPVKEGAMKPTTDGKWAHIVCALLVPEVFFGDPEGREGIDCSQVPNKRLLEKCYICNSLNGCAIVCSESKCPLAFHVTCGLKEDLSIEYKEEKSATIVAGFCKTHTEIWKKQQQSGKYKIVAAH 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00987 337 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 126 327 - -
Bva09g00987 337 SUPERFAMILY FYVE/PHD zinc finger 136 201 IPR011011 -
Bva09g00987 337 SMART PHD_3 265 319 IPR001965 -
Bva09g00987 337 SMART PHD_3 146 195 IPR001965 -
Bva09g00987 337 ProSiteProfiles Zinc finger PHD-type profile. 144 197 IPR019787 -
Bva09g00987 337 Pfam PHD-finger 146 195 IPR019787 -
Bva09g00987 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 208 321 IPR013083 -
Bva09g00987 337 MobiDBLite consensus disorder prediction 118 141 - -
Bva09g00987 337 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 207 IPR013083 -
Bva09g00987 337 CDD PHD_BRPF_JADE_like 146 194 - -
Bva09g00987 337 ProSiteProfiles Extended PHD (ePHD) domain profile. 208 319 IPR034732 -
Bva09g00987 337 PANTHER PHD FINGER PROTEINS 126 327 - -
Bva09g00987 337 MobiDBLite consensus disorder prediction 22 55 - -
Bva09g00987 337 Pfam PHD-zinc-finger like domain 210 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00987 Bva-Chr9 5080033 5083405 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00987 1 335 C2H2 Transcription Factor Family AT3G14740 53.977 1.90e-116 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bva09g00987 zf-HC5HC2H_2 1.9e-29 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00987 K11380 - fve:101296758 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00987 09 5080033 5083405 Bva09g00987 09 5080033 5083405 ECH