LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva09g00979	ATGCCTGGGAATAAGTATAACggtaataatgataattttccAGGTCGTGTTGAACGACttttaagagaaagagagctAAGAAAAAGCAGCAGGGCTTCTCATTTGAATGAGTCAactgataataataattgggTTACTGAACCTTTTGAGCATGACCAGCGcttaagagaagaaaataactcAGTTGCTTCCTATGTTGAACAATTCCTCGAAGGGGCTGCAGCTGCAAGGGCGTTTGGTGAGGCATGTGAAAGGCTAGAAGGGAGGCCTTTAAGACAGCGACTTTTGGTGGTGGCGAACAGGCTGCCAGTCTCAGCAGTTAGGAAAGGTATAGACTCTTGGTCCCTGGATATAAGTGCTGGTGGGCTAGTGAGCGCTCTTTTAGGTGTCAAGGAGTTTGAGGCAAGGTGGATAGGGTGGGCAGGTGTCAATGTGCCAGATGAGATTGGACAAAAGGCACTTACTAAAGCTTTGGCTGAAAAGAGGTGTATCCCAGTATTTCTTGATGAAGAAATTGTTCATCAATATTATAATGGCTACTGTAACAACATCTTGTGGCCCCTTTTTCATTACCTTGGACTTCCACAAGAAGATCGCCTGGCCACCACGCGGAGTTTCCAGTCTCAGTTTGCAGCATATAAGAAAGCAAATCAAATGTTTGCCGATGTTGTGAACAAACACTATGAAGAGGGTGACGTTGTTTGGTGCCATGATTACCATCTTATGTTTCTTCCTAAATGCTTAAAGGAGCATAACAGCAAAATGAAAGTTGGCTGGTTCCTCCACACCCCATTTCCATCTTCTGAAATTCATAGGACACTGCCATCTCGTTCAGAGCTCCTGCATTCTGTTCTTGCAGCTGATTTAGTTGGTTTTCACACCTATGATTATGCAAGGCACTTTGTTAGTGCTTGTACTCGCATCCTTGGACTCGAGGGTACGCCTGAAGGGGTTGAGGATCAAGGGAGAGTGACTCGAGTCGCTGCCTTTCCAATTGGGATAGATTCAGAACGGTTCATTCGCGCACTGGAGCTTCCTCAAGTCCAGGATCAcgttaaagaattaaaagaaagatttaaAGGCAGAAAGGTAATGTTAGGTGTTGATCGCCTTGATATGATTAAAGGAATTCCTCAGAAAATTCTTGCATTCGAAAAATTTCTGGAAGAGAATCCTTATTGGCGTGATAAAGTAGTTTTGCTTCAAATTGCTGTGCCAACAAGAACTGATGTTCCTGAGTATCAGAAGCTAACAAGCCAGGTTCATGAGATTGTTGGTCGTATTAATGGCAGATTTGGAACACTGACTGCGGTTCCCATACATCACCTGGATCGTTCTCTCGACTTTCTTGCACTATGTGCTTTATATGCTGTTACTGATGTAGCACTTGTCACATCCTTGAGAGATGGAATGAATCTTGTCAGCTATGAATTTGTGGCCTGCCAGGATCAAAAGAAAGGGGTTCTCATTCTTAGTGAATTTGCTGGTGCTGCACAATCTCTAGGTGCTGGAGCAATTCTAGTTAACCCCTGGAACATCACTGAAGTTGCTGCTGCAATTGCCCAGGCTCTGAATATGTCAtctgaagaaagagagaaacgACATAAGCATAATTCTTCACATGTAAAAACCCATACTGCTCAGGAATGGGCAGAAACTTTTGTGAGTGAACTAAATGATACTGTAGTTGAGGCACAAATAAGGACTAGACAGGTTCCACCTCCGCTTCCAATCAAGACTGCAATCGAACGTTATCAACAGTCGACTAATCGATTGCTCATTTTGGGATTCAATGCAACTTTAACTGAACCAGTTGACAAGAAAGGTGACCAGATTAAAGAAATGGAACTCAAAGTGCATCCAGAATTGAAACAACCCGTGAGAGAACTTTGCGGTGATCCAAAGACCACAGTTGTTGTGCTTAGTGGAAGTGATAGAAATGTCCTAGATGAGAACTTCAAGGAGTATGACATGTGGTTGGCAGCAGAGAATGGGATGTTCTTAAGCCATACAAGGGGAGAATGGATGTCAACAATGCCAGAGCATCTGAATATGGAATGGGTTGACTGTGTAAAGCATGTTTTTGAGTACTTCACGGAAAGAACACCCCGGTCACATTTTGAACTCCGGGAAACTTCACTTGTATGGAATTACAAATATGcagATGTTGAATTTGGAAGACTCCAGGCAAAGGACATGTTGCAGCATCTCTGGACAGGTCCAATTTCTAATGCATCAATCGATGTTGTTCAAGGTAGCCGATCTGTCGAAGTGCGAGCTGTCGGCGTTGCAAAGGGAGCAGCTATTGACCGCATCCTGGGTGAGATAGTTCATAGTAAATCCATGACAACACCAATTGATTATGTCCTTTGTATAGGACATTTTCTTGGAAAGGATGAAGATGTTTATACCTTTTTCGAGCCGGAGCTTCCTTCTGATGGTCTCGGTCTCCCAAGAACCAAGGTAACAACCGAAGGGGTTAAGTTTCCTGGTGAGAGAAAATCATCTTTGAGGATTCCAGCCAGTAAAAATGGACACAAGTCATCTCCGAACAAGACGCAGAGGCCTCTGCCAAATTCTGAGAAGAAAACCAACAATCACGTCTGCGGCGCAGCACGACGGCCGGCGCCGGAGAAGATCTCGTGGAATGTCCTTGACCTGAAGAAGGAGAATTACTTCTCTTGCGCTGTTGGGCGAACTCGAACGAGTGCCCGATATACGCTTGGATCATCAGATGATGTAGTTGCATTTCTGAATGAACTTGCAGACGCAACTACTCCAAATTTCTG	2789	0.4249	MPGNKYNGNNDNFPGRVERLLRERELRKSSRASHLNESTDNNNWVTEPFEHDQRLREENNSVASYVEQFLEGAAAARAFGEACERLEGRPLRQRLLVVANRLPVSAVRKGIDSWSLDISAGGLVSALLGVKEFEARWIGWAGVNVPDEIGQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQSQFAAYKKANQMFADVVNKHYEEGDVVWCHDYHLMFLPKCLKEHNSKMKVGWFLHTPFPSSEIHRTLPSRSELLHSVLAADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRVTRVAAFPIGIDSERFIRALELPQVQDHVKELKERFKGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPYWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFLALCALYAVTDVALVTSLRDGMNLVSYEFVACQDQKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAAAIAQALNMSSEEREKRHKHNSSHVKTHTAQEWAETFVSELNDTVVEAQIRTRQVPPPLPIKTAIERYQQSTNRLLILGFNATLTEPVDKKGDQIKEMELKVHPELKQPVRELCGDPKTTVVVLSGSDRNVLDENFKEYDMWLAAENGMFLSHTRGEWMSTMPEHLNMEWVDCVKHVFEYFTERTPRSHFELRETSLVWNYKYADVEFGRLQAKDMLQHLWTGPISNASIDVVQGSRSVEVRAVGVAKGAAIDRILGEIVHSKSMTTPIDYVLCIGHFLGKDEDVYTFFEPELPSDGLGLPRTKVTTEGVKFPGERKSSLRIPASKNGHKSSPNKTQRPLPNSEKKTNNHVCGAARRPAPEKISWNVLDLKKENYFSCAVGRTRTSARYTLGSSDDVVAFLNELADATTPNF	929

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva09g00979	929	Pfam	Glycosyltransferase family 20	94	559	IPR001830	GO:0003824\|GO:0005992
	Bva09g00979	929	CDD	HAD_TPP	592	809	-	-
	Bva09g00979	929	SUPERFAMILY	HAD-like	591	922	IPR036412	-
	Bva09g00979	929	PANTHER	TREHALOSE-6-PHOSPHATE SYNTHASE	26	921	IPR001830	GO:0003824\|GO:0005992
	Bva09g00979	929	Gene3D	-	681	761	-	-
	Bva09g00979	929	TIGRFAM	trehalose_OtsA: alpha,alpha-trehalose-phosphate synthase (UDP-forming)	94	559	IPR012766	GO:0003825\|GO:0005992
	Bva09g00979	929	Gene3D	-	615	775	IPR023214	-
	Bva09g00979	929	MobiDBLite	consensus disorder prediction	841	866	-	-
	Bva09g00979	929	MobiDBLite	consensus disorder prediction	824	866	-	-
	Bva09g00979	929	Pfam	Trehalose-phosphatase	614	822	IPR003337	GO:0003824\|GO:0005992

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva09g00979	Bva-Chr9	5032885	5043756	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva09g00979	1	926	Trehalose Biosynthesis Gene Families	AT1G78580	79.706	0.0	1521

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva09g00979	K16055		-	egr:104450066	1562.74

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva09g00979	09	5032885	5043756	Bva07g01578	07	15251467	15264735	ECH
	Bva09g00979	09	5032885	5043756	Bva09g00979	09	5032885	5043756	ECH

Showing 1 to 2 of 2 entries