LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva09g00973	ATGGCTCTGCTCTGTGGTTCAACTTCGGTGACGTTTCCTTCATCTTCAGCTAAACCTTCATTTGCTTTTTCGAAGAATGGAATTGCTAAAACTTCATTTGTTGGGTTCCAATTGGCATTACCAATTCGGAACAATTTTCCTGCCAGTTCCAGAGGAAATTTTCAGGTCCGTTGCCAGGACCTCTCGGTCGTCCCAAAAGAACAACGTTGGATGTTCGAGGAATCCGAAGTCAATGGTCTGGATATTTGGAATAAGACCTGGTATCCAAAGGCAGCAGATCATGTAAATACAGATAAAACATGGTACATCGTTGATGCTACAGATAAAATCCTTGGAAGACTAGCATCAACAATAGCTATTTACATCCGAGGGAAAAACCTGGCGACCTATACTCCCAGCGTGGATATGGGTGCACACGTAATTGTGGTGAATGCAGAAAAGGTTGCTGTATCTGGGAAAAAGAGGACCCAAAAACTTTATAGGAGGCATTCTGGACGACCTGGTGGAATGAAAGTGGAAACATTTGCTCAGCTACAGCAGAGAATTCCAGAAAGAATTATTGAACATGCTGTTCGTGGCATGCTTCCAAAAGGGAGGCTTGGCCGAAAACTCTTCACCCACCTAAAGGTTTATGAGGGACCAGATCATCCACACGAGGCACAGAAACCAATTGAGTTGCCAATTAGGGACAAGAGAATACAGAAGCAAAGATA	713	0.4362	MALLCGSTSVTFPSSSAKPSFAFSKNGIAKTSFVGFQLALPIRNNFPASSRGNFQVRCQDLSVVPKEQRWMFEESEVNGLDIWNKTWYPKAADHVNTDKTWYIVDATDKILGRLASTIAIYIRGKNLATYTPSVDMGAHVIVVNAEKVAVSGKKRTQKLYRRHSGRPGGMKVETFAQLQQRIPERIIEHAVRGMLPKGRLGRKLFTHLKVYEGPDHPHEAQKPIELPIRDKRIQKQR	237

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva09g00973	237	Hamap	50S ribosomal protein L13 [rplM].	101	227	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Bva09g00973	237	Gene3D	Ribosomal protein L13	90	233	IPR036899	GO:0003735\|GO:0005840\|GO:0006412
	Bva09g00973	237	CDD	Ribosomal_L13	101	214	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Bva09g00973	237	TIGRFAM	rplM_bact: ribosomal protein uL13	95	226	IPR005823	GO:0003735\|GO:0005840\|GO:0006412
	Bva09g00973	237	MobiDBLite	consensus disorder prediction	213	237	-	-
	Bva09g00973	237	Pfam	Ribosomal protein L13	99	217	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Bva09g00973	237	SUPERFAMILY	Ribosomal protein L13	95	229	IPR036899	GO:0003735\|GO:0005840\|GO:0006412
	Bva09g00973	237	ProSitePatterns	Ribosomal protein L13 signature.	191	213	IPR023563	GO:0003735\|GO:0005840\|GO:0006412
	Bva09g00973	237	PANTHER	RIBOSOMAL PROTEIN L13	56	237	IPR005822	GO:0003735\|GO:0005840\|GO:0006412
	Bva09g00973	237	PANTHER	50S RIBOSOMAL PROTEIN L13, CHLOROPLASTIC-LIKE	56	237	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva09g00973	Bva-Chr9	5001718	5004666	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva09g00973	103	227	Cytoplasmic Ribosomal Protein Gene Family	AT3G07110	31.061	8.04e-08	49.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva09g00973	K02871		-	qsu:111999177	373.244

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bva09g00973	09	5001718	5004666	Bva09g00973	09	5001718	5004666	ECH