Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00936 ATGTCTCTTAGGAAGGTTTTCCGTTCTCGTAAATTTTCCAGATCCTTCAAGGAAGTGAGAGCCCTTGAGGAGGATGAGCGAAGGAACCGACTCGGTGGTGGTGATGGTGACGAGGCGGACGAGGATTCGGGCGAGTCCGGTGAGGGCACCGCCGCGTACGGAAATGCATGGTCCTCCATGCTGCCGGAGCTCCTCGGGGAGATCATAAAGCGAGTGGAGGCCAGCCAGGAGCAGTGGCCCCATCGCCAAAACGTCGTTGCTTGTGCCTGCGTGTGCAAACGGTGGAGGGAACTGACTAGGGAGATTGTACGGTCCCCTTCCCAGAGCGGCAAAATTACTTTCCCTTCTTGTCTTAAACAGCCAGGACCTCGTGATTTTTCCCACCAATGCCTTATAAAGCGGAACAAGAAGACCTCAACGTTTTACTTATATCTTGCCCTTACACCATCATTCACAGATAAAGGGAAGCTCCTCTTAGCAGCTAGGAGATATAGGCGTGGTGCCCATACTGAGTATATAATATCACTTGATGCTGATGACTTATCCCAAGGGAGCAATGCTTATGTTGGAAAGTTAAGCTCGGACTTTCTTGGCACCAATTTCACAATCTATGACAGCCAACCACCCCATAGTGGTGCAAAGCCATCCAACAACAGGGCCAGCCGCCGATTTGCTAGCAAGCAGATAAGCCCTCAAGTTCCTGCTGGCAACTTTGAGGTGGGGCAGGTCTCATACAAGTTCaatcttttaaaatcaagAGGACCTAGGAGGATGATTTGCTCATTGAAATTCCCTGCCCCTTCATCAGGAGAAGGTTCAGATAGCAAATTGCTGGACAACCATAATGTAAATGATAAAGAACAAGCTGCTACTGGCTactcaattttgaaaaataaagctCCAAGGTGGCACGAGCATTTGCAGTGCTGGTGCTTGAATTTCCATGGTCGAGTGACTGTAGCATCAGTGAAGAACTTTCAGCTAGTTGCGACTGTGGACCAAAGCCAGCCGGGAGGGAAAGGAGATGAGGAAACGGTCCTCCTCCAGTTTGGTAAAGTAGGAGATGATACGTTCACCATGGATTACAGACAGCCCTTATCTGCCTTCCAGGCCTTCGCTATTTGCCTAACAAGCTTTGGCACTAAACTAGCATGCgagta 1160 0.4828 MSLRKVFRSRKFSRSFKEVRALEEDERRNRLGGGDGDEADEDSGESGEGTAAYGNAWSSMLPELLGEIIKRVEASQEQWPHRQNVVACACVCKRWRELTREIVRSPSQSGKITFPSCLKQPGPRDFSHQCLIKRNKKTSTFYLYLALTPSFTDKGKLLLAARRYRRGAHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSNNRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMICSLKFPAPSSGEGSDSKLLDNHNVNDKEQAATGYSILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00936 386 ProSitePatterns Tub family signature 1. 314 327 IPR018066 -
Bva09g00936 386 Gene3D Tubby Protein; Chain A 113 386 IPR025659 -
Bva09g00936 386 Pfam F-box domain 57 104 IPR001810 GO:0005515
Bva09g00936 386 MobiDBLite consensus disorder prediction 23 52 - -
Bva09g00936 386 PANTHER TUBBY-LIKE F-BOX PROTEIN 7 1 386 - -
Bva09g00936 386 MobiDBLite consensus disorder prediction 23 37 - -
Bva09g00936 386 PANTHER TUBBY-RELATED 1 386 - -
Bva09g00936 386 SUPERFAMILY Tubby C-terminal domain-like 106 386 IPR025659 -
Bva09g00936 386 Pfam Tub family 118 381 IPR000007 -
Bva09g00936 386 ProSitePatterns Tub family signature 2. 371 386 IPR018066 -
Bva09g00936 386 PRINTS Tubby superfamily signature 296 313 IPR000007 -
Bva09g00936 386 PRINTS Tubby superfamily signature 314 330 IPR000007 -
Bva09g00936 386 PRINTS Tubby superfamily signature 237 264 IPR000007 -
Bva09g00936 386 PRINTS Tubby superfamily signature 188 212 IPR000007 -
Bva09g00936 386 PRINTS Tubby superfamily signature 172 188 IPR000007 -
Bva09g00936 386 PRINTS Tubby superfamily signature 364 386 IPR000007 -
Bva09g00936 386 PRINTS Tubby superfamily signature 343 362 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00936 Bva-Chr9 4812977 4816819 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00936 1 386 TUB Transcription Factor Family AT1G53320 71.173 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bva09g00936 Tub 5.7e-101 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00936 K19600 - gmx:100808096 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00936 09 4812977 4816819 Bva09g00936 09 4812977 4816819 ECH