Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00898 ATGGATCAGATGACTGATTTGGAGATGGATCAACAAAGGCATGGTTATTTTCATCCCGAACCTTGTATCCTTCTCAGGGGTGGCGACTTCTCACAAACTAATATCCACACAGTGACAGCTTCAGGGAACATAACTAATATTGATTCCCACTATTTACCAGATGCTTATGACAGTGCTGTGATGTATGGGGTGACACAATACAATGGCATCCAGCATCAACACAATCTTGATATGGGTGTTGCAGCAGCAACCAACTTATATTATCCTGGCATGAATCCTTCTTCTAGCACTGGCATATTACCTGTGCCTCTGAATCATAGAGCATCTGATCAGTTGCCTGCTTCTAGCTCATTTGCAGTTTCTGGAGTTTCATCAGATAATTATGGAAGAAGCAGTGGCTTCACTGATGATGTCAGAGGtctatacaaaagaaaaactgctGAAGGCATCAGAGGAAATTTCCAGTGTTTTAATCCTTCAGCTAGTTCAGTTCCTCCCCAAAATGCAAGGCACCTTGATGGTGTTGCTATTATGGATGCTGCATCCTTTTCGCTGCCTCAATTCCCTGTGAGACCTCATGGTAGTACGTGGAGCAGGTCAAGTGAGGCTGTTATGATGAATGAGCATAACCATGTATTTCGTGGAAACTATTTGGGGCAGCATTTTCAGCCAGTAGCTCCTCCCTGGTTGGACCAACAGTTAAACAGTAATAACGGAGATGGACATACTGCAGCATGGAATCCGTCTCTTCGAATGCCTTATATGCAAGCTCCCAATCTTAATGGAAGTTCTTTAGAGAATGCCAACATGGATCTGCAGAGATATCGGGATACAGCTAGCAGCAGAAGTGGCCTCAGGTTTCTTCATCCTCCTCCTGCCAACCATCAGCACCATAATTATCATCATCCAACACTGTCTATGCCAGGAGTGAGAGGCCACAATGTCAATTTTCTCCCACCAGTAACTGGGACTTCATATAGAGTTCTGACAAATCCCTCTCGCAGTACTGTGATACCAGCACAGAATGGTTTTGAGATGGGCACAAGGCATGTTGGCCCTTCACCATCAGCTGGCCAACCGATATTCCGTCCTCACAGAAGAGTGTTGCCTGAGACAAATCTTAGACATCGAAATCTTCCGCACATGAGCGTTCTCCAAGTTGACGACGTTGCAATACTTGATATGCAAGACTTCTATGAAGCGGGATATGTTGATAATCACAGAGATATGCGTTTGGACATTGAGGACATGTCTTATGAGGAGCTTCTTGCATTGGGTGAGCGGATCGGCAATGTTAGCACTGGTTTATCAGACGAAATCTTAACAAGGCACTTGAGGACCAAAACTTTTGAAACATCCGCAAAGGTTATCAATCTGGAGGAGGAGGCAGCCTATGAGTCTGAGGATCAGGAAACTGAATCCTGCATAATATGCCAGGATGAATACAAGAACGGTGAGAAAATTGGAATTCTTCAATGCGGGCATGAGTATCATGAAAGTTGCTTAAAGAAGTGGTTGCTTGTGAAAAATGTCTGCCCTGTATGCAAATCAGAAGCAATGACTCCCGGAAGGAAGGGCTTATA 1583 0.439 MDQMTDLEMDQQRHGYFHPEPCILLRGGDFSQTNIHTVTASGNITNIDSHYLPDAYDSAVMYGVTQYNGIQHQHNLDMGVAAATNLYYPGMNPSSSTGILPVPLNHRASDQLPASSSFAVSGVSSDNYGRSSGFTDDVRGLYKRKTAEGIRGNFQCFNPSASSVPPQNARHLDGVAIMDAASFSLPQFPVRPHGSTWSRSSEAVMMNEHNHVFRGNYLGQHFQPVAPPWLDQQLNSNNGDGHTAAWNPSLRMPYMQAPNLNGSSLENANMDLQRYRDTASSRSGLRFLHPPPANHQHHNYHHPTLSMPGVRGHNVNFLPPVTGTSYRVLTNPSRSTVIPAQNGFEMGTRHVGPSPSAGQPIFRPHRRVLPETNLRHRNLPHMSVLQVDDVAILDMQDFYEAGYVDNHRDMRLDIEDMSYEELLALGERIGNVSTGLSDEILTRHLRTKTFETSAKVINLEEEAAYESEDQETESCIICQDEYKNGEKIGILQCGHEYHESCLKKWLLVKNVCPVCKSEAMTPGRKGL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00898 527 SMART ring_2 475 515 IPR001841 -
Bva09g00898 527 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 127 524 - -
Bva09g00898 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 452 521 IPR013083 -
Bva09g00898 527 SUPERFAMILY RING/U-box 465 520 - -
Bva09g00898 527 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 127 524 IPR045191 GO:0061630
Bva09g00898 527 ProSiteProfiles Zinc finger RING-type profile. 475 516 IPR001841 -
Bva09g00898 527 Pfam Ring finger domain 474 516 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00898 Bva-Chr9 4633240 4638055 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00898 385 520 C3H Transcription Factor Family AT2G15530 44.755 1.51e-36 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00898 K19041 - qsu:112039435 608.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00898 09 4633240 4638055 Bva09g00898 09 4633240 4638055 ECH