Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00891 ATGGaggatttcttcttttccttccaaAACCAGAAACACGCTGAAGgaaaacagaagaagaagaggttAACAGAAGAGCAAGTGAACATCTTAGAGAGAAGCTTTGTCTCCAACAACAGCAAGAAGCTCGAACCAGAGCGAAAGTTTCAGCTCGCAAACCAACTTGGTGTCCCTGCAAGACAGATCGCTATATGGTACCAGAACAAACGAGCTCGCTGGAAGACTCAGAGACTCGAACTGGAACACGGTGCTCTTCAGTTGAAGCTAGAGAATGCTTTGGCTGAGAAGAGAAAGCTAGATAAAGAGGTGGAAAAGCTCAAGGCAGAGCTGGACAAGGCACAAGACATGTTGGTTGGCATCAAAGGTGGAGACCATAATGCTGCTTTTTCTGAATTCTCAGTGTCTTGTGACGAGGGAGGGAGCTCTGCTGGGTGTGATGCTAATGGGTTTTGGCAAAGTGGTGAGGTCTTGCAAGTTGAGGATCTTTATGCTTTTTTCATGAGTGCAAAAGGGTCAAAATA 521 0.4242 MEDFFFSFQNQKHAEGKQKKKRLTEEQVNILERSFVSNNSKKLEPERKFQLANQLGVPARQIAIWYQNKRARWKTQRLELEHGALQLKLENALAEKRKLDKEVEKLKAELDKAQDMLVGIKGGDHNAAFSEFSVSCDEGGSSAGCDANGFWQSGEVLQVEDLYAFFMSAKGSK 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00891 173 SUPERFAMILY Homeodomain-like 16 83 IPR009057 -
Bva09g00891 173 Coils Coil 75 116 - -
Bva09g00891 173 Gene3D - 10 81 - -
Bva09g00891 173 SMART HOX_1 16 80 IPR001356 GO:0003677
Bva09g00891 173 CDD homeodomain 17 77 IPR001356 GO:0003677
Bva09g00891 173 Pfam Homeodomain 17 74 IPR001356 GO:0003677
Bva09g00891 173 ProSitePatterns 'Homeobox' domain signature. 51 74 IPR017970 GO:0000981|GO:0006355
Bva09g00891 173 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-52 9 170 - -
Bva09g00891 173 ProSiteProfiles 'Homeobox' domain profile. 14 76 IPR001356 GO:0003677
Bva09g00891 173 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 9 170 IPR045224 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00891 Bva-Chr9 4611433 4611954 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00891 14 168 Homeobox Transcription Factor Family AT5G53980 45.161 2.46e-36 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Bva09g00891 Homeodomain 6.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00891 - - gmx:100781030 189.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00891 09 4611433 4611954 Bva07g01717 07 16008734 16009389 ECH
Bva09g00891 09 4611433 4611954 Bva09g00891 09 4611433 4611954 ECH