Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00889 ATGGATAGCTACTATCAATTTGATAACAACAATACCCTTTTGCCGCCTGGTTTTCGTTTCCACCCAACTGATGAGGAGCTCATCACCTACTACCTCCTCAAGAAGGTGCTTGACACTACCTTCACTGGCAGAGCTATTGCCGAAGTTGACCTCAACAAGTGCGAGCCTTGGGAGCTTCCTGCCAAAGCGAAAATGGGGGAGAAGGAGTGGTACTTCTACAGCCTGCGTGACAGAAAATACCCAACTGGGCTACGTACGAATAGGGCTACCGAGGCTGGTTACTGGAAAGCCACGGGGAAAGACCGAGAGATTTACAGCTCCAAGACATGTTCTCTGGTGGGGATGAAGAAAACCCTGGTTTTCTACAGAGGAAGAGCACCTAAAGGCGAGAAGAGTAACTGGGTCATGCATGAGTATCGCCTAGAAGGCAAATTTGCCTACCATTACCTCTCACGTAGCTCCAAGgaTGAGTGGGTCATTTCACGTGTTTTCCAAAAGAGCCACACCGGCGGCGGTGGGGCCACCGTGTCTGCAAGCAGCGGGTCCAAGAAGACCCGAATGAGCTCCTCTTGTAATATGAACCTCTACCCAGAACCCAGTTCTCCCTCTTCGGTTTATCTGCCGCCACTGCTTGATTCCTCCCCCTACCCTAACATCACTACCAGCTGCACCGCCGCCATGAACGACCAGGAAATCTGCTCATACGAAAGCACCACGTCAAGGGAGCACGTGTCCTGTTTCTCCACAATCTCTGCAACCTCGACCGCTGCGAACAACTTCGCCAACGTTAGCTTCGACCTTGCTCCTACGCAGCCCTCTCTGTCTATGGACCCTTTTGCTCGATTCCAAAGGAACGTTGGAGTTTCTGCCTTCCCAAGCCTGAGGTCCCTGCAGGACAATCTTCagcttcctttcttcttctccccgCCGGCGCAGCCTGACCACAGCGACATGAATGGGTGTGGCAGCAACTTCGCGAACTGGACGGTTCCGGAGGAGCCGAGGGTGGCTGACAGTTGTGGTGCCAGCCTAGCTTTGGCCCCCTCGGAGCTTGACTGTGTGTGGAGGTGTTG 1073 0.5228 MDSYYQFDNNNTLLPPGFRFHPTDEELITYYLLKKVLDTTFTGRAIAEVDLNKCEPWELPAKAKMGEKEWYFYSLRDRKYPTGLRTNRATEAGYWKATGKDREIYSSKTCSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRLEGKFAYHYLSRSSKDEWVISRVFQKSHTGGGGATVSASSGSKKTRMSSSCNMNLYPEPSSPSSVYLPPLLDSSPYPNITTSCTAAMNDQEICSYESTTSREHVSCFSTISATSTAANNFANVSFDLAPTQPSLSMDPFARFQRNVGVSAFPSLRSLQDNLQLPFFFSPPAQPDHSDMNGCGSNFANWTVPEEPRVADSCGASLALAPSELDCVWRC 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00889 357 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
Bva09g00889 357 Gene3D NAC domain 23 170 IPR036093 GO:0003677|GO:0006355
Bva09g00889 357 ProSiteProfiles NAC domain profile. 14 166 IPR003441 GO:0003677|GO:0006355
Bva09g00889 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 352 - -
Bva09g00889 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-LIKE 5 352 - -
Bva09g00889 357 SUPERFAMILY NAC domain 10 166 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00889 Bva-Chr9 4588779 4590580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00889 4 355 NAC Transcription Factor Family AT5G53950 56.533 6.79e-122 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Bva09g00889 NAM 7.2e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00889 - - gmx:100805987 458.759
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00889 09 4588779 4590580 Bva09g00889 09 4588779 4590580 ECH