Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00887 ATGGCTCCAAGAGACAGAACCGCTACTCTTGCCGGATCCAACCCGACCCACAACGCCAAAGAGATCCGTTACAGAGGCGTCAGGAAGAGGCCTTGGGGACGCTATGCTGCTGAGATCCGTGACCCAGGGAAGAAGACTCGGGTCTGGCTTGGCACCTTTGACACGGCAGAGGAGGCGGCCCGTGCTTACGACGCCGCTGCTAGAGAGTTTCGCGGTGTCAAAGCCAAAACCAATTTCCCTACCCCATCTGAACTCGTAAATAACTCTGTTCATAGTCCTAGCCAGAGCTCCACCGTCGAATCAGCCTCTCCGCCGCCACCGCCTCCCCCTGCGCTGGACCTGACACTCACTCCACTCTCCGCCACCGGCGGCGCTCTTGGGTTTCCGGTCATGACGGTGGCACGTCCGGTGATGTTTTTTGATGCCTTTGCTCGTACGGATAGTATGATTAACGTTGGACGCAGTGAGATTTGTGCTTTTGATAGGCCCGTAGCTGATTTCCGTCACCCTGTTCGTGGCGGCGGGGGGGACCGGAGTGACTCTGAATCATCCTCCGTCGTGGACTACGAGCATCTCCCACCGCAGAGACTCTTGGATCTTGACCTAAATGTTCCTCCACCGCCGGAGGTTGCTTG 635 0.5764 MAPRDRTATLAGSNPTHNAKEIRYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDAAAREFRGVKAKTNFPTPSELVNNSVHSPSQSSTVESASPPPPPPPALDLTLTPLSATGGALGFPVMTVARPVMFFDAFARTDSMINVGRSEICAFDRPVADFRHPVRGGGGDRSDSESSSVVDYEHLPPQRLLDLDLNVPPPPEVA 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00887 211 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
Bva09g00887 211 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Bva09g00887 211 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Bva09g00887 211 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Bva09g00887 211 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Bva09g00887 211 MobiDBLite consensus disorder prediction 166 211 - -
Bva09g00887 211 MobiDBLite consensus disorder prediction 80 99 - -
Bva09g00887 211 MobiDBLite consensus disorder prediction 1 24 - -
Bva09g00887 211 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 196 - -
Bva09g00887 211 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Bva09g00887 211 MobiDBLite consensus disorder prediction 78 112 - -
Bva09g00887 211 PANTHER ERF FAMILY PROTEIN 1 196 - -
Bva09g00887 211 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Bva09g00887 211 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00887 Bva-Chr9 4573901 4574990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00887 11 164 AP2-EREBP Transcription Factor Family AT3G15210 56.069 3.23e-49 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva09g00887 AP2 2.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00887 K09286 - gmx:100500601 225.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00887 09 4573901 4574990 Bva07g01728 07 16072171 16073170 ECH
Bva09g00647 09 3371725 3372621 Bva09g00887 09 4573901 4574990 ECH
Bva07g01989 07 17380565 17381455 Bva09g00887 09 4573901 4574990 ECH
Bva09g00887 09 4573901 4574990 Bva14g01411 14 7038459 7039524 ECH
Bva09g00887 09 4573901 4574990 Bva13g01161 13 5799304 5800383 ECH
Bva09g00887 09 4573901 4574990 Bva09g00887 09 4573901 4574990 ECH