Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00879 ATGGAGAGGAAGAGAAGTTCAATTGAGAAGATCAAAAAGGTTGGCATAGTTGAAGAAGTGGATTATCAAGTGGAGGAAGATGATGGAGGGGATGGAGCTGGTTCTCTTGCagaattagaagaaaagaagaaagcatttGTTGGGAGTGGGAGAAGAGGATCAAGCTGTCAGGCAGAGAGTTGTGGAGCTGATCTCACTGATGCAAAACGCTACTATCGCCGCCACAAGGTGTGTGAATTCCATTCCAAGGCGCCTACTGTGATGGTTGCTGGGCTGAGGCAAAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGGGAATTTGATGAAGCTAAAAGAAGCTGCCGCAGGCTTTTGGCCGGACACAATGAACGCCGCCGGAAATGCTCAGCTGTGTCTTGCATTATG 410 0.4634 MERKRSSIEKIKKVGIVEEVDYQVEEDDGGDGAGSLAELEEKKKAFVGSGRRGSSCQAESCGADLTDAKRYYRRHKVCEFHSKAPTVMVAGLRQRFCQQCSRFHDLGNLMKLKEAAAGFWPDTMNAAGNAQLCLAL 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00879 136 ProSiteProfiles Zinc finger SBP-type profile. 53 130 IPR004333 GO:0003677
Bva09g00879 136 Gene3D - 53 108 IPR036893 GO:0003677|GO:0005634
Bva09g00879 136 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 106 - -
Bva09g00879 136 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 34 106 IPR044817 GO:0003677
Bva09g00879 136 SUPERFAMILY SBT domain 55 109 IPR036893 GO:0003677|GO:0005634
Bva09g00879 136 Pfam SBP domain 56 109 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00879 Bva-Chr9 4530836 4531529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00879 38 109 SBP-box Gene Family AT2G33810 56.944 4.40e-24 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva09g00879 SBP 1.4e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00879 - - aprc:113864686 140.584