Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00864 ATGGAGGGTTCATCTGGGTCTGCTTGGCAGAGGTCTAATAGTTCTAGAGCATTGATTGCCTCTGGAGTTTTAGACAGGAACCCCCGGCTTGTTTGTCCTGAAAGAATCCCTTTTTCTGGTGAGGCATCTTATGATTCTGggtttaaaaaggaaaaagataataatgttGTGTTGGGTCAAGGCGATCACCCTAAAAACCACGGTGGTTTCTCTGGGGTTCGTGATGATGAAATAGCAGCTGACCCTTTTATTCGTTCTATAGAATGGGGTGATATAAGCTTAAGGCAATGGTTAGATAAACCTGATCGATCCGTAGGTGTCTCGGAATGTCTGCACATATTTAGGCAAATAGTAGAAATTGTTAATATTGCACATTCTCAAGGAATTGTTGTTCATAATGTAAAGCCTTCCTGCTTTGTAATGTCTTCTTTCAATCACGTCTCCTTCATTGAGTCAGCTTCTTGCTCAGACTCTGGCTCAGATTCTTTGGAAGATGGATTAAACCGTAGACCCGTTGAGGAAAAAAACCGATCATCTCTGTGTCCCTATGATATGCTTCGGCAGAGAAATTTAggaaatgataattttgtacCTGTCCGCACGTCAACAACTGCTTTATCAGAATCTAGTTGCATGCTGTCAAGCGCAGTCTACGCAGCACGTGCATCATTAATAGAAGATACTGAAGgacataaaaacaaagaaaggagaaaggtTGAAGAAGTAGAAGGGAAGAAGCAATCATTTCCAATGAAACAAATATTGCTAATGGAGACAAGTTGGTACACTAGTCCCGAAGAGGTAGCCGGTGCTCAAAGTTCCTGTGCTTCAGACATTTACAGATTGGGGGTTTTCCTCTTCGAGTTGTTCTGTCCGCTCAGctcaagagaagaaaagagcagAACCATGGCTAGCCTCAGACATAGAGTTCTTCCTCCACAGTTACTTCTGAAGAGGCCTAAAGaagcttctttttgtttgtggTTACTTCATCCTGAGCCTAGTAGTCGTCCCACACTTGGCAGGGAGTTATTACAGAGTCAGTTCCTTAATGACCAGAGAGATGATATGGAAGAACGTGAAGCAGCAATAGAGCTTAGAGAAATGATAGAGGAGCAGGAATTATTGCTAGAATTCCTTCTATTACTTcagcaaagaaaacaagaagctGCTGATAAATTGCAACACACTGTTTCTTTTCTGTGTTCGGATATTGAAGAAGTGACCAAGCAGCAACTGAGATTTAAAGAAAAGGCTGGTACTGAGCTAGGGAGTGATGGTCGGTCAGCATCAAATTTCCCATCCACAACATTTGTTGATAGTGAAGATTCTGCTGGCCTAGGAACCAGAAAACGGGTCAGACCAGGGCTGCATGCTTACAGCATCGGGGAATGTGATGATGGCAATGATCAGAAAAACCATGGAAgtattctttcaaaaaattctCGGCTGATGAAGAATTTTAAGAAACTCGAGTCTGCATACATTTTAACAAGATGCAAATCAACCTACTCATCAGGGAGACCAGTGGTTAGACATTCACCAATATCTACTGATGGTAGAGGGTCTTTCGTTGCGACTGAAAGAAGTTATGTCAATAACTTGGCGTCAAAAGAGAAGTGCAGGGACGATAGAAGTGGTTGGGTAAATCCTTTCCTGGAGGGTTTGTGCAAGTATCTTTCTTTCAGTAAGCTAAAGGTTAAGGCTGACCTAAAGCAAGGAGATCTTTTGCATTCTTCCAACCTAGTATGCTCGCTCAGTTTTGATCGTGATGGAGAATTTTTTGCAACTGCTGGcgtaaataagaaaattaaagtatttgaATGTGACTCAATCATAAATGAGGATCGTGATATCCATTATCCAGTAGTTGAGATGCTTAGCAAGTCAAAGTTGAGTAGCATATGCTGGAATACTTACATCAAAAGTCAAATTGCTTCAAGTAACTTTGAAGGTGTAGTGCAGTTATGGGATGTCACAAGAAGTCAATTGCTGTCAGAACTGAGGGAGCATGAGCGGCGGGTGTGGTCCATTGATTTCTCAGCAGCAGACCCAACAATGTTGGCTAGCGGGAGCGATGATGGTTCTGTTAAGCTATGGAGTATCAATCAGGGAGTTAGTGTTGGAACcatcaaaacaaaagcaaatgtGTGCTGTGTCCAGTTTCCCCTGGATACAGGTCGTTTTCTTGCATTCGGCTCAGCGGATCATCGGATATATTACTATGATCTCCGTAACCTTAAAGTTCCTCTTTGTACTTTGGTTGGACATAATAAGACCGTGAGTGATGTCAAGTTTGTGGACACTGTGAACCTTGTCTCTTCATCCACTGACAACACTTTGAAGCTTTGGGATTTGTCAATGTGCACATCTCGAGTTATAGATACTCCAGTTCAATCATTCACAGGTCACATGAATGTCAAGAACTTTGTGGGGTTGTCAGTATCTGATGGTTACATTGCTACTGGTTCAGAGACAAACGAGGTGTTCATATACCATAAAGCTTTTACCATGCCAGCATTGTCCTTCAAGTTTCAAAACACAGATCCACTTTCTGGGCAAGAAATGGATGATCCTGCACAGTTCGTCTCTTCTGTTTGCTGGCGCGGTCAGTCTTCGACCTTAGTTGCTGCAAATTCCACTGGCAACATCAAAATTCTGGAGATGGTTTA 2672 0.3978 MEGSSGSAWQRSNSSRALIASGVLDRNPRLVCPERIPFSGEASYDSGFKKEKDNNVVLGQGDHPKNHGGFSGVRDDEIAADPFIRSIEWGDISLRQWLDKPDRSVGVSECLHIFRQIVEIVNIAHSQGIVVHNVKPSCFVMSSFNHVSFIESASCSDSGSDSLEDGLNRRPVEEKNRSSLCPYDMLRQRNLGNDNFVPVRTSTTALSESSCMLSSAVYAARASLIEDTEGHKNKERRKVEEVEGKKQSFPMKQILLMETSWYTSPEEVAGAQSSCASDIYRLGVFLFELFCPLSSREEKSRTMASLRHRVLPPQLLLKRPKEASFCLWLLHPEPSSRPTLGELLQSQFLNDQRDDMEEREAAIELREMIEEQELLLEFLLLLQQRKQEAADKLQHTVSFLCSDIEEVTKQQLRFKEKAGTELGSDGRSASNFPSTTFVDSEDSAGLGTRKRVRPGLHAYSIGECDDGNDQKNHGSILSKNSRLMKNFKKLESAYILTRCKSTYSSGRPVVRHSPISTDGRGSFVATERSYVNNLASKEKCRDDRSGWVNPFLEGLCKYLSFSKLKVKADLKQGDLLHSSNLVCSLSFDRDGEFFATAGVNKKIKVFECDSIINEDRDIHYPVVEMLSKSKLSSICWNTYIKSQIASSNFEGVVQLWDVTRSQLLSELREHERRVWSIDFSAADPTMLASGSDDGSVKLWSINQGVSVGTIKTKANVCCVQFPLDTGRFLAFGSADHRIYYYDLRNLKVPLCTLVGHNKTVSDVKFVDTVNLVSSSTDNTLKLWDLSMCTSRVIDTPVQSFTGHMNVKNFVGLSVSDGYIATGSETNEVFIYHKAFTMPALSFKFQNTDPLSGQEMDDPAQFVSSVCWRGQSSTLVAANSTGNIKILEMV 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00864 889 MobiDBLite consensus disorder prediction 419 443 - -
Bva09g00864 889 ProSitePatterns Trp-Asp (WD) repeats signature. 771 785 IPR019775 -
Bva09g00864 889 SMART serkin_6 2 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva09g00864 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 753 786 IPR001680 GO:0005515
Bva09g00864 889 PRINTS G protein beta WD-40 repeat signature 771 785 IPR020472 -
Bva09g00864 889 PRINTS G protein beta WD-40 repeat signature 644 658 IPR020472 -
Bva09g00864 889 PRINTS G protein beta WD-40 repeat signature 687 701 IPR020472 -
Bva09g00864 889 ProSiteProfiles Trp-Asp (WD) repeats profile. 667 709 IPR001680 GO:0005515
Bva09g00864 889 MobiDBLite consensus disorder prediction 424 442 - -
Bva09g00864 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 753 786 - -
Bva09g00864 889 SUPERFAMILY Protein kinase-like (PK-like) 88 363 IPR011009 -
Bva09g00864 889 SMART WD40_4 619 657 IPR001680 GO:0005515
Bva09g00864 889 SMART WD40_4 848 887 IPR001680 GO:0005515
Bva09g00864 889 SMART WD40_4 793 832 IPR001680 GO:0005515
Bva09g00864 889 SMART WD40_4 746 784 IPR001680 GO:0005515
Bva09g00864 889 SMART WD40_4 660 700 IPR001680 GO:0005515
Bva09g00864 889 SMART WD40_4 572 607 IPR001680 GO:0005515
Bva09g00864 889 SMART WD40_4 703 742 IPR001680 GO:0005515
Bva09g00864 889 SUPERFAMILY WD40 repeat-like 577 886 IPR036322 GO:0005515
Bva09g00864 889 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 667 704 - -
Bva09g00864 889 Pfam WD domain, G-beta repeat 749 784 IPR001680 GO:0005515
Bva09g00864 889 Pfam WD domain, G-beta repeat 577 606 IPR001680 GO:0005515
Bva09g00864 889 Pfam WD domain, G-beta repeat 662 700 IPR001680 GO:0005515
Bva09g00864 889 PANTHER PROTEIN SPA1-RELATED 2 1 889 IPR044630 GO:0009640
Bva09g00864 889 Gene3D Transferase(Phosphotransferase) domain 1 91 361 - -
Bva09g00864 889 ProSiteProfiles Protein kinase domain profile. 1 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva09g00864 889 Coils Coil 225 245 - -
Bva09g00864 889 PANTHER PROTEIN SPA1-RELATED 3 1 889 - -
Bva09g00864 889 Gene3D - 553 889 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00864 Bva-Chr9 4448550 4453719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00864 657 831 Miscellaneous Gene Families AT5G08390 25.140 8.69e-07 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Bva09g00864 WD40 5.2e-05 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00864 - - vra:106755001 1413.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00864 09 4448550 4453719 Bva07g01746 07 16169965 16175650 ECH
Bva09g00864 09 4448550 4453719 Bva09g00864 09 4448550 4453719 ECH