Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00854 ATGTTAAACTTTCAAGCCTCTGCTCAACCATCTCAGATGGACAACAACATGGTCCCCAGAATATCTGTCTCCCGTCCACTAGCCCCTCCTCTGGTGTCTTTCATCGCTGCTCTTAGCACTGTAATGCTAATCATGTGGGTTTCAGCTTTCTCCACCATGTTGTCTCTGGCCATTGTCCTTGTTCTTTACATCATATATGTGTCCCTTTGCTGGTTTGTCCatgaaataagagaatttgATATTGAGATGGGACAGAGGTTTCAGAACCcagaaaataatcaaagggTGTCGGAATTTGTGGATAGATTTTCATGGGTTTTAGAGGAGAGAGGGAGACAAGGACAGCAGGAATATTCAAAGGAGCTGTTTGGTTCTGTTGTGTGTTTTGGAAGCCATGGAATGCCATCAGGTTGCAGCGACTGCGCAATTTGCTTAGATGATTTCGAGAAAGTCATAAACGACGTTCTTCTTTCCTGGACAATTGATCAAGGTCAGTCTCAGAGCGATGTAGAAGCAGGCGAAACCATCCAATTAAGGCAAAGTGATAACATGCAAAGTGATAATGAGCCATTCATTGAAGAAACTGCTATCCATGAAAATGTGACACTGATACGAGTATTTTGGATGGACGTTTTAGACAGATATAGGACAGAGTAccttgaggaagaagaagagcaaAAACAGAGATTGTTGGATATGCTATCTCCACAAGTGAAGTACAGAAGGCAAGGAGGGTTATACAGTTGTGATGAATGCGTGATTTGCTTGGATGATTTTGTCGATGGGGACTCCTGTCGAGTTTTTCCTGTATGCAAACACAATTTCCATTTGGATTGCATAGATAGATGGTTGAAGAATGGTCAAGCAACTTGCCCCATCTGTCGACGATATATTCTAGATGAATGcaagatatg 914 0.3961 MLNFQASAQPSQMDNNMVPRISVSRPLAPPLVSFIAALSTVMLIMWVSAFSTMLSLAIVLVLYIIYVSLCWFVHEIREFDIEMGQRFQNPENNQRVSEFVDRFSWVLEERGRQGQQEYSKELFGSVVCFGSHGMPSGCSDCAICLDDFEKVINDVLLSWTIDQGQSQSDVEAGETIQLRQSDNMQSDNEPFIEETAIHENVTLIRVFWMDVLDRYRTEYLEEEEEQKQRLLDMLSPQVKYRRQGGLYSCDECVICLDDFVDGDSCRVFPVCKHNFHLDCIDRWLKNGQATCPICRRYILDECKI 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00854 304 ProSiteProfiles Zinc finger RING-type profile. 252 295 IPR001841 -
Bva09g00854 304 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 165 298 - -
Bva09g00854 304 Pfam Ring finger domain 250 295 IPR001841 -
Bva09g00854 304 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 11 151 - -
Bva09g00854 304 CDD mRING-H2-C3H2C2D_ZSWM2 251 295 - -
Bva09g00854 304 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 11 151 - -
Bva09g00854 304 SMART ring_2 252 294 IPR001841 -
Bva09g00854 304 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 165 298 - -
Bva09g00854 304 SUPERFAMILY RING/U-box 251 299 - -
Bva09g00854 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 212 299 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00854 Bva-Chr9 4409272 4412240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00854 251 298 C3H Transcription Factor Family AT2G17450 54.167 3.19e-14 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00854 - K16282 qsu:112004174 114.775