Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00853 ATGGCCGAGCTCACAGAATTGTTCCCCATTGGCAAATTATTCGAAGCCCTACATCCTCTGTGTGAGCACACAATCACAGTACCAGATCTTCCAGCCTTCATTGTTTTCTGCATCATGGTCGTGTTCTTCTTCCACCTCTGCTACAACATTTTCCGAGGTTTATTCTTCTGGTGCATCAGAAATGAAATTGTGCAGGAAGATCTTGAACCAGGAATCCATCCAGCTTATCCTTCTACGAGCCGGCCTCTGGCACTTCGATATCTCATGGAGAACAGTCTGCATGCATGGAGAATCGTTGGAGGGTTAGAACGAGAGTTCGAGGTGAAACGAGGGCAGAGGCTGAGAGGTTCAAAGAAATTGCCTCCTCTGGTTAGCTATGGAAGCCATGAAGAAGTGGGAAGAAGCTCTGATGACTGTGCTATTTGCTTGGAGGATTTCAGAGTTGGTGAATTCTGTCAAGTTTTTCCAGAGTGCAGAcacatttttcattcaaattgCTTAGATTTCTGGTTACAGCTGAATCTAACGTGCCCATTGTGTCGGAGCTCCATAGAAGAATA 560 0.4446 MAELTELFPIGKLFEALHPLCEHTITVPDLPAFIVFCIMVVFFFHLCYNIFRGLFFWCIRNEIVQEDLEPGIHPAYPSTSRPLALRYLMENSLHAWRIVGGLEREFEVKRGQRLRGSKKLPPLVSYGSHEEVGRSSDDCAICLEDFRVGEFCQVFPECRHIFHSNCLDFWLQLNLTCPLCRSSIEE 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00853 186 SMART ring_2 139 180 IPR001841 -
Bva09g00853 186 ProSiteProfiles Zinc finger RING-type profile. 139 181 IPR001841 -
Bva09g00853 186 PANTHER RING FINGER DOMAIN-CONTAINING 19 184 - -
Bva09g00853 186 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 19 184 - -
Bva09g00853 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 185 IPR013083 -
Bva09g00853 186 Pfam Ring finger domain 137 181 IPR001841 -
Bva09g00853 186 SUPERFAMILY RING/U-box 130 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00853 Bva-Chr9 4407645 4408205 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00853 25 186 C3H Transcription Factor Family AT1G53010 34.286 9.96e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00853 - - gmx:102660073 185.267