Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00849 ATGACTTTTGAAAATTACCTTACTGCCGATCGATTATATCCCATAGATTATGGTAGGGTGATCATTGCTCTGATTTCTTCCTACGTTCTTCGTCCATTTCtggttttcttttgtaaagACCACATTTCTATGGAACAAAATTTACTGGAACCTGCATGCTTGGACTCCAATGAGGATGTCTCGCTtaggaaaaatatgaaatccATTTCAACAGAGACAACAGTATGTGCTagtgataatgataatgattgCTTTGGTTGCAATATTTGCTTGGACTCTGCGCAAGACCCTGTGGTTACTCTCTGCGGTCACCTCTACTGCTGGCCATGCATATACAAGTGGCTTCAAGTCCAGAGCTCCTCTGATGAATCAGAACAACGGCAGAAGTGCCCAGTTTGTAAAGCCGACATCTCTCATACCTCATTAGTTCCCCTTTATGGCCGTGGAAATTCAGCTTCTGAGGCCAAGAGAACCCAGATGGGTCTGGGAATACCTAAAAGGCCACCTCCTAATAGCTTGAATTCATTGTTAAATTCTGTGAGTGCATCTACTTCTCATCCAGGTCAACGACTCCATCCAAATCATTTTCAGCCACAACCACATCCATTTCAATATCAACAATACTTCCCCCCGCTTTATGGTGGCTATGCTGCAAATGGATCACCTTATCATGGAGATGCAGCTATGGCTGCTGTCTTTGGTCCCATGATCGGTATGGTTGGGAAGATGGTCTTTGCAATCATTTTTGGGAACTCTGATGCAAATTCGTTTTCTTACCCTCATAGTAGAAGTGGCAGAAATAGAATGAGAAGGCTGGAAATGCAGGCTGACAAGTCTCTGAACAGACTGTATAGGTACATATATATCACGTGCAGTCCATGGGATGCTGTAAGAGACTGCTTGCGTGATAGAGGCCATGTGTA 923 0.416 MTFENYLTADRLYPIDYGRVIIALISSYVLRPFLVFFCKDHISMEQNLLEPACLDSNEDVSLRKNMKSISTETTVCASDNDNDCFGCNICLDSAQDPVVTLCGHLYCWPCIYKWLQVQSSSDESEQRQKCPVCKADISHTSLVPLYGRGNSASEAKRTQMGLGIPKRPPPNSLNSLLNSVSASTSHPGQRLHPNHFQPQPHPFQYQQYFPPLYGGYAANGSPYHGDAAMAAVFGPMIGMVGKMVFAIIFGNSDANSFSYPHSRSGRNRMRRLEMQADKSLNRLYRYIYITCSPWDAVRDCLRDRGHV 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00849 307 SUPERFAMILY RING/U-box 82 148 - -
Bva09g00849 307 Pfam RING-type zinc-finger 87 131 IPR027370 -
Bva09g00849 307 ProSiteProfiles Zinc finger RING-type profile. 87 134 IPR001841 -
Bva09g00849 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 59 196 IPR013083 -
Bva09g00849 307 CDD RING-HC_AtRMA_like 85 135 - -
Bva09g00849 307 ProSitePatterns Zinc finger RING-type signature. 102 111 IPR017907 -
Bva09g00849 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 53 291 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bva09g00849 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA3-LIKE 53 291 - -
Bva09g00849 307 SMART ring_2 87 133 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00849 Bva-Chr9 4390780 4393657 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00849 44 283 C3H Transcription Factor Family AT4G27470 40.081 6.70e-47 156
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00849 K10666 - gmx:100817526 241.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00849 09 4390780 4393657 Bva09g00849 09 4390780 4393657 ECH