LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bva09g00827	ATGGAGAGCACCGACTCGTCGACCGGTTCACAGCAACCCAATCTCCCACCTGGTTTCCGGTTCCACCCCACCGACGAAGAGCTTGTCGTTCACTACCTCAAGAAGAAAGCCTCCTCTGCTCCTCTTCCCGTTGCGATCATAGCAGAAGTGGACCTTTATAAGTTCGATCCATGGGAACTTCCAGCTAAGGCATCGTTTGGGGAGCAAGAGTGGCTTGTTGATAACAAGCCTAACAATAAGCCTCCTGGGTATGACTTGGGCAACAAGAAAAACTCTCTTCGGCTCGACGATTGGGTGTTATGCCGAATCTATCAGAAGAGCAACACGCATAGGTTACCTATGGATCATTACAGGGAAGATTTGATGGATGATATGATTTG	380	0.4895	MESTDSSTGSQQPNLPPGFRFHPTDEELVVHYLKKKASSAPLPVAIIAEVDLYKFDPWELPAKASFGEQEWLVDNKPNNKPPGYDLGNKKNSLRLDDWVLCRIYQKSNTHRLPMDHYREDLMDDMI	126

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bva09g00827	126	Gene3D	NAC domain	24	91	IPR036093	GO:0003677\|GO:0006355
	Bva09g00827	126	Pfam	No apical meristem (NAM) protein	16	73	IPR003441	GO:0003677\|GO:0006355
	Bva09g00827	126	PANTHER	NAC TRANSCRIPTION FACTOR 56	1	72	-	-
	Bva09g00827	126	PANTHER	NAC TRANSCRIPTION FACTOR 56	72	126	-	-
	Bva09g00827	126	SUPERFAMILY	NAC domain	7	106	IPR036093	GO:0003677\|GO:0006355
	Bva09g00827	126	MobiDBLite	consensus disorder prediction	1	22	-	-
	Bva09g00827	126	MobiDBLite	consensus disorder prediction	1	17	-	-
	Bva09g00827	126	PANTHER	NAC TRANSCRIPTION FACTOR-LIKE PROTEIN	1	72	-	-
	Bva09g00827	126	PANTHER	NAC TRANSCRIPTION FACTOR-LIKE PROTEIN	72	126	-	-
	Bva09g00827	126	ProSiteProfiles	NAC domain profile.	15	126	IPR003441	GO:0003677\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bva09g00827	Bva-Chr9	4272669	4274705	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bva09g00827	5	71	NAC Transcription Factor Family	AT1G61110	83.582	7.99e-36	123

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NAC	Bva09g00827		NAM	3.4e-17	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Bva09g00827	-		-	tcc:18593864	150.984