Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00790 ATGGACTTGCTTCGATCGAACCTTTCCCGGGTTCGGATCCCAGAACCCACCAATCGTATCTACAAGCAAGAATGCTGCTTATCTTTCGAAACTCCGAGGTCAGAAGGAGGGCTTTTCATTGACATGTGCACGTTCCTTGCTTTTGGGAAGGATTATGTGGGTTGGAATTATGAGAAGACTGGAAATCCTGTTTATCTTCATATAAAGCAGACGAAGAAATCAGTTCCTGAAGACAGGCCTTCAAAGAAACCAACTCTATTAGCTATAGGTGTTGATGGGGGATTTGATAACAATGAACCTGAATATGAAGAAACTCACAGTATAATTATATTGCCTGACTATGTATCTCTACCATTTCCTTCGGTGGAATTGCCTGAGAAGGTAAGGTTGGCTGCTGATGCTATCATACTTGCTGAGGGTGCTGAACGGAAAGAACAACTTGCGGCTTGGACTCTTGATAAGAAACAAACCAGTGCCTATGCCGTGAATTTACAGCAGATTAACAATGGTGTTATTATTCCTCGATCTGGGTGGAAATGCGCTAAATGTGAGAAGAGAGACAATCTTTGGCTAAATCTGACTGATGGAATGATCCTTTGTGGGAGGAAAAACTGGGATGGAACTGGTGGCAAAAACCATGCTATCGAACACTATAAGGAGACAGGTTATCCACTTGCTGTAAAGCTTGGGACTATCACTGCTGATCTGGAAGCAGCAGATGTTTTCTCCTATCCCGAGGATGACAGTGTTTTGGATCCACTTTTAGCACAGCATCTGGCATTTTTTGGCATTGACTTTTCATCACTTCAAAAGACTGAAATGACAACTGCTGAAAGGGAACTGGACCAAAATACCAATTTTGACTGGAACCGAATCCAAGAAAGTGGACAGGAAGTGGATCCTATTTTTGGACCTGGATACACAGGATTGGTCAATCTTGGAAACAGCTGTTACTTGGCAGCAACTATGCAAGTTGTGTTTTCTACGGAGTCCTTTGCTTTACGGTATTACGTCAACCAAAGTCTAAAGGAGGCATTTAAGGTGGCTCCTGCTGATCCAACTGTAGACCTGAATATGCAATTGACAAAATTAGCTCATGGTTTACTGTCTGGTAAATATTCTGTTCCAGTGTTAGAGGATAATGCAAATGCAAATGTGACTACACCAACTACCACTGCTAAGCAGGAAGGGATACCCCCACGCATGTTCAAAGCTGTAATTGCTGCCAGCCACCCTGAATTTACATCTATGAGGCAACAGGATGCTTTGGAATTTTTCCTGCATTTTCTTGACCAAGTTGAACGGGTAAATCCTGCAAATTCTGTACTGCATCCTGCAAGGAGTTTCAAGTTTGGTATTGAAGATCGAATCTTGTGTTCATCTGGAAAAGTTGCATATAATAGAAGGCATGACTACATCCTTTCTCTTAATATTCCTCTGCATGAAGCAACTAATAAAGGAGAATTAGAAGCCTTCAACAAACTAAAAGCAGAGAAACTTGCTGAAGGAAAGGAAGTGTCTGGTGATGAGATTGTGCGTCCAAGGGTTCCTTTGGAAGCTTGCCTTGCGAACTTCTCAGCTCCTGAGGAGATACATGATTTCTACAGCACTGCCTTAAAGGCAAAGACAACAGCTCTGAAGACGGCAGGTCTGACCTCATTCCCTGATTACCTGGTGTTACACATGCGAAAATTTGTTATGGAGACGGGCTGGGTGCCCAAAAAGCTTGATGTCTATATAGATGTTCCTGATATTATAGATATTAGTCAAATGCGCAGCAAAGGTCACCAAGTTGGGGAAGAGCTCTTACCAGATGGAGTTCCAAGTGAGGAGGAATCAAGCATACCCTCGGCTAATGAAGACATTGTTGCACAGCTTGTTTCCATGGGCTTTAACCATCTTCACTGTCAGAAAGCTGCAATAAGCACCTCAAATGCTGGAATAGAAGAGGCAATGAATTGGTTACTTTCTCACATGGATGATCCAGATATCGATAATCCTATTTCTGAAGGGCATAGCTCTGGAACTTTGTCAAATATTGACCAATCAAAAGTTGATACTTTAATTTCATTCGGATTTCAAGAAGAAATTGCTCGAAAGGCACTGAAGGCATCGGGTGGTGACATTGAGAAAGCAACTGATTGGATATTTAGCAATCCTGATGCATCTGTATCCAGCATGGAAACTACTACATCCAACACTCAACCAGTCACCAGTGATGCTGCCCTACCCGATGGAGGAGGAAGATATAGGCTTATTGGAATTGTTAGTCACATTGGAACTTCTACGCAGTGTGGTCACTATGTTGCTCACATTGTCAAAGATGGTAGATGGGTTATCTTCAACGACAACAAGGTTGCAGCTTCCATTAATCCTCCCAAGGACATGGGCTATCTTTATTTCTTCGAGAGGCTTCGTAGTTA 2423 0.4251 MDLLRSNLSRVRIPEPTNRIYKQECCLSFETPRSEGGLFIDMCTFLAFGKDYVGWNYEKTGNPVYLHIKQTKKSVPEDRPSKKPTLLAIGVDGGFDNNEPEYEETHSIIILPDYVSLPFPSVELPEKVRLAADAIILAEGAERKEQLAAWTLDKKQTSAYAVNLQQINNGVIIPRSGWKCAKCEKRDNLWLNLTDGMILCGRKNWDGTGGKNHAIEHYKETGYPLAVKLGTITADLEAADVFSYPEDDSVLDPLLAQHLAFFGIDFSSLQKTEMTTAERELDQNTNFDWNRIQESGQEVDPIFGPGYTGLVNLGNSCYLAATMQVVFSTESFALRYYVNQSLKEAFKVAPADPTVDLNMQLTKLAHGLLSGKYSVPVLEDNANANVTTPTTTAKQEGIPPRMFKAVIAASHPEFTSMRQQDALEFFLHFLDQVERVNPANSVLHPARSFKFGIEDRILCSSGKVAYNRRHDYILSLNIPLHEATNKGELEAFNKLKAEKLAEGKEVSGDEIVRPRVPLEACLANFSAPEEIHDFYSTALKAKTTALKTAGLTSFPDYLVLHMRKFVMETGWVPKKLDVYIDVPDIIDISQMRSKGHQVGEELLPDGVPSEEESSIPSANEDIVAQLVSMGFNHLHCQKAAISTSNAGIEEAMNWLLSHMDDPDIDNPISEGHSSGTLSNIDQSKVDTLISFGFQEEIARKALKASGGDIEKATDWIFSNPDASVSSMETTTSNTQPVTSDAALPDGGGRYRLIGIVSHIGTSTQCGHYVAHIVKDGRWVIFNDNKVAASINPPKDMGYLYFFERLRS 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00790 807 CDD UBA2_atUBP14 683 720 - -
Bva09g00790 807 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 806 - -
Bva09g00790 807 SUPERFAMILY UBA-like 672 721 IPR009060 GO:0005515
Bva09g00790 807 SMART Zf_UBP_1 179 234 IPR001607 GO:0008270
Bva09g00790 807 Pfam Ubiquitin carboxyl-terminal hydrolase 308 802 IPR001394 GO:0004843|GO:0016579
Bva09g00790 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 104 IPR013083 -
Bva09g00790 807 PIRSF UBP 3 806 IPR016652 GO:0004843|GO:0016579
Bva09g00790 807 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 617 658 IPR015940 -
Bva09g00790 807 Pfam Zn-finger in ubiquitin-hydrolases and other protein 180 253 IPR001607 GO:0008270
Bva09g00790 807 SUPERFAMILY RING/U-box 158 266 - -
Bva09g00790 807 Gene3D - 606 672 - -
Bva09g00790 807 SMART uba_6 681 718 IPR015940 -
Bva09g00790 807 SMART uba_6 619 657 IPR015940 -
Bva09g00790 807 Gene3D - 673 725 - -
Bva09g00790 807 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 679 719 IPR015940 -
Bva09g00790 807 Pfam Variant UBP zinc finger 11 73 IPR041432 -
Bva09g00790 807 Pfam UBA/TS-N domain 680 716 IPR015940 -
Bva09g00790 807 Pfam UBA/TS-N domain 619 655 IPR015940 -
Bva09g00790 807 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 10 806 - -
Bva09g00790 807 CDD Peptidase_C19B 309 803 - -
Bva09g00790 807 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 253 IPR013083 -
Bva09g00790 807 ProSiteProfiles Zinc finger UBP-type profile. 156 266 IPR001607 GO:0008270
Bva09g00790 807 SUPERFAMILY Cysteine proteinases 304 804 IPR038765 -
Bva09g00790 807 Gene3D Cysteine proteinases 301 806 - -
Bva09g00790 807 CDD UBA1_atUBP14 619 663 - -
Bva09g00790 807 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 308 805 IPR028889 -
Bva09g00790 807 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 309 324 IPR018200 GO:0004843|GO:0006511
Bva09g00790 807 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 750 768 IPR018200 GO:0004843|GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00790 Bva-Chr9 4066845 4073578 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00790 611 665 C2H2 Transcription Factor Family AT1G04850 36.364 1.14e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00790 K11836 - gmx:100805602 1378.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00790 09 4066845 4073578 Bva09g00790 09 4066845 4073578 ECH