Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00748 ATGGGATTTAGATACAAAGCAACTAATTCCCTTTGGAAGATGCAGATCTTCGTGAAAACTTTGACCGGAAAGACGATCACCCTTGAGGTGGAGAGTTCCGATACCATTGACAACGTGAAAGCAAAGATCCAAGACAAGGAAGGGATCCCGCCGGACCAACAGTGGCTTATCTTCGCCGGCAAGCAGCTAGAGGATGGTCGAACCCTTGCCGATTACAATATCCAAAAGGAATCGACCCTCCACCTGGTGCTCCGCCTGAGGGGTGGGATGCAAATATTTGTAAAGACTCTCACCGGCAAAACCATCACCCTTGAGGTGGAGAGCTCCGATACCATTGATAATGTCAAGGCTAAGATTCAGGACAAGGAAGGGATTCCCCCTGACCAACAGAGACTCATCTTTGCTGGTAAACAGCTTGAGGATGGTCGTACTCTTGCTGACTATAATATCCAGAAGGAATCCACTCTCCACCTTGTGCTTCGTCTTAGAGGTGGTATGCAAATCTTTGTCAAGACGTTGACGGGGAAAACCATAACCCTTGAGGTCGAATCTTCAGATACAATTGATAATGTTAAAGCCAAGATTCAGGACAAAGAGGGTATCCCACCTGATCAGCAAAGGCTTATTTTTGCTGGGAAGCAGCTTGAAGATGGCCGCACTCTTGCCGATTACAATATCCAAAAGGAGTCTACTCTTCACTTGGTGTTGAGGCTGAGGGGAGGAATGCAAATTTTTGTCAAGACTCTAACTGGGAAGACTATAACTTTGGAGGTTGAAAGTTCTGATACAATTGATAACGTGAAGGCGAAGATACAAGACAAGGAGGGTATCCCACCTGATCAACAGAGGCTTATCTTCGCAGGGAAGCAATTAGAAGATGGGCGTACCCTTGCTGATTATAACATTCAAAAGGAATCCACTTTGCACTTGGTTTTGCGGCTACGCGGTGGTATGCAGATATTTGTGAAGACCTTGACAGGGAAGACTATTACGCTGGAGGTAGAAAGCTCAGATACTATTGATAATGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAGCAGAGGTTAATTTTTGCTGGAAAGCAATTGGAGGATGGTCGAACATTGGCTGATTACAATATCCAGAAGGAGTCAACTCTCCATCTGGTCCTTCGCCTTCGGGGAGGATGTTA 1184 0.4603 MGFRYKATNSLWKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQWLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGC 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00748 394 PANTHER UBIQUITIN 13 89 296 - -
Bva09g00748 394 PANTHER UBIQUITIN 13 317 393 - -
Bva09g00748 394 PANTHER UBIQUITIN 13 165 370 - -
Bva09g00748 394 PANTHER UBIQUITIN 13 12 220 - -
Bva09g00748 394 ProSitePatterns Ubiquitin domain signature. 116 141 IPR019954 -
Bva09g00748 394 PRINTS Ubiquitin signature 100 120 IPR019956 -
Bva09g00748 394 PRINTS Ubiquitin signature 121 141 IPR019956 -
Bva09g00748 394 PRINTS Ubiquitin signature 142 163 IPR019956 -
Bva09g00748 394 ProSitePatterns Ubiquitin domain signature. 268 293 IPR019954 -
Bva09g00748 394 CDD Ubl_ubiquitin 242 317 - -
Bva09g00748 394 PANTHER UBIQUITIN 89 296 - -
Bva09g00748 394 SUPERFAMILY Ubiquitin-like 13 89 IPR029071 -
Bva09g00748 394 SUPERFAMILY Ubiquitin-like 317 393 IPR029071 -
Bva09g00748 394 ProSitePatterns Ubiquitin domain signature. 40 65 IPR019954 -
Bva09g00748 394 CDD Ubl_ubiquitin 90 165 - -
Bva09g00748 394 ProSiteProfiles Ubiquitin domain profile. 90 165 IPR000626 GO:0005515
Bva09g00748 394 Pfam Ubiquitin family 92 163 IPR000626 GO:0005515
Bva09g00748 394 Pfam Ubiquitin family 244 315 IPR000626 GO:0005515
Bva09g00748 394 Pfam Ubiquitin family 168 239 IPR000626 GO:0005515
Bva09g00748 394 Pfam Ubiquitin family 16 87 IPR000626 GO:0005515
Bva09g00748 394 Pfam Ubiquitin family 320 391 IPR000626 GO:0005515
Bva09g00748 394 ProSiteProfiles Ubiquitin domain profile. 14 89 IPR000626 GO:0005515
Bva09g00748 394 ProSiteProfiles Ubiquitin domain profile. 242 317 IPR000626 GO:0005515
Bva09g00748 394 ProSiteProfiles Ubiquitin domain profile. 166 241 IPR000626 GO:0005515
Bva09g00748 394 ProSitePatterns Ubiquitin domain signature. 192 217 IPR019954 -
Bva09g00748 394 SMART ubq_7 242 313 IPR000626 GO:0005515
Bva09g00748 394 SMART ubq_7 14 85 IPR000626 GO:0005515
Bva09g00748 394 SMART ubq_7 318 389 IPR000626 GO:0005515
Bva09g00748 394 SMART ubq_7 90 161 IPR000626 GO:0005515
Bva09g00748 394 SMART ubq_7 166 237 IPR000626 GO:0005515
Bva09g00748 394 ProSiteProfiles Ubiquitin domain profile. 318 393 IPR000626 GO:0005515
Bva09g00748 394 ProSitePatterns Ubiquitin domain signature. 344 369 IPR019954 -
Bva09g00748 394 SUPERFAMILY Ubiquitin-like 89 165 IPR029071 -
Bva09g00748 394 PANTHER UBIQUITIN 317 393 - -
Bva09g00748 394 PANTHER UBIQUITIN 165 370 - -
Bva09g00748 394 PANTHER UBIQUITIN 12 220 - -
Bva09g00748 394 CDD Ubl_ubiquitin 318 393 - -
Bva09g00748 394 SUPERFAMILY Ubiquitin-like 241 317 IPR029071 -
Bva09g00748 394 CDD Ubl_ubiquitin 14 89 - -
Bva09g00748 394 Gene3D - 7 90 - -
Bva09g00748 394 Gene3D - 91 165 - -
Bva09g00748 394 Gene3D - 166 241 - -
Bva09g00748 394 Gene3D - 242 317 - -
Bva09g00748 394 Gene3D - 318 394 - -
Bva09g00748 394 CDD Ubl_ubiquitin 166 241 - -
Bva09g00748 394 SUPERFAMILY Ubiquitin-like 165 241 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00748 Bva-Chr9 3814676 3816595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00748 14 90 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 97.403 1.50e-46 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00748 K08770 - olu:OSTLU_26775 734.947
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00748 09 3814676 3816595 Bva09g00748 09 3814676 3816595 ECH