Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00688 ATGACCATGCGCCAACTCCTACAGTATTATAACACTAATGCTGAGTCTTGGAAACCCCACCACCAAAACGACTTGAACAGCAAGATTTTGCTCATATCTATCATCTCTTTAGTAGTTGTGTTAGTTCTTGTCTTAGCGCTTCACCTCTATGCTCGATGCGTTCTAACCCGCCAAGCTCGTCGCCGCGCCGCCATTCGCCGGTTCAATCTCACCGTGGCACATGCTCGTGCCCACTCCATAGACCCGCCCAACATCGGGCTCGACCCGACCCTCATAGCTGCTCTCCCCGTATTCGTCTTCAAACGCAAGGAAGGATCTCAACAGAATGGCCATGATTCTTCTTTGGTGGTGGAGTGTGCTGTGTGTTTGAGTGCTttggaagatgaagaaatggtGAGGTTGCTCCCCAAATGTAACCACACTTTCCATGTAAACTGCATCGACGCATGGTTGGCTTCGCGTTCCACGTGTCCCGTTTGTCGAGCCAAGGCTGAGCCACGGCTCGAACCACACCCGCGCGAGCCTCCTGCTGCTGCTCCAGCTCTGGCTCATGCTGATGCACCAACGGCTCCACCGTCGGAACAAGAACAACCGCCGCCGCCACATATAGAGGGTACATCAGATGGTGGGTCACCAAAAATCAACGGTTCTAATTCACGCTTGAGCTCATTCAGAAGGATTCTCACTAGGGAAAGATCATCAAGAAGAATCCAACCTTCCACCCAAGATGATCATAACACTATTCCAGATTTGGAGAGACAGTG 764 0.5039 MTMRQLLQYYNTNAESWKPHHQNDLNSKILLISIISLVVVLVLVLALHLYARCVLTRQARRRAAIRRFNLTVAHARAHSIDPPNIGLDPTLIAALPVFVFKRKEGSQQNGHDSSLVVECAVCLSALEDEEMVRLLPKCNHTFHVNCIDAWLASRSTCPVCRAKAEPRLEPHPREPPAAAPALAHADAPTAPPSEQEQPPPPHIEGTSDGGSPKINGSNSRLSSFRRILTRERSSRRIQPSTQDDHNTIPDLERQ 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00688 254 PANTHER RING FINGER DOMAIN-CONTAINING 21 254 - -
Bva09g00688 254 Pfam Ring finger domain 118 161 IPR001841 -
Bva09g00688 254 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 21 254 - -
Bva09g00688 254 ProSiteProfiles Zinc finger RING-type profile. 119 161 IPR001841 -
Bva09g00688 254 MobiDBLite consensus disorder prediction 210 224 - -
Bva09g00688 254 SUPERFAMILY RING/U-box 118 168 - -
Bva09g00688 254 CDD RING-H2_PA-TM-RING 118 161 - -
Bva09g00688 254 MobiDBLite consensus disorder prediction 167 254 - -
Bva09g00688 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 167 IPR013083 -
Bva09g00688 254 MobiDBLite consensus disorder prediction 225 239 - -
Bva09g00688 254 SMART ring_2 119 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00688 Bva-Chr9 3517515 3518825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00688 10 254 C3H Transcription Factor Family AT2G42360 42.400 1.34e-50 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00688 K19038 - jre:108993654 188.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00688 09 3517515 3518825 Bva09g00688 09 3517515 3518825 ECH