Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00660 ATGCTGCTTCTCTTtgtatttctcttctctctctcgtCTCCCCTCACTTCCTCTCTAAACCAAGATGGTCTCTTTCTCTGGCAAGCCAAGCTTCAGCTCTCTGATCCTACCAATGCACTTTCCAACTGGAACGAGCGTGACGCCACCCCCTGTGCCTGGCATGGCGTCGTTTGCGACAATGCCACCGGCAATGTCATTCAGCTCGACCTCACCAACTCGCAGCTTGAGGGTCCTTTCCCCATCACTCTCTGTCGTATCCCTTCCCTCACTTACATCTCTCTCTCAGAGAACTCCATCAATTCGTCTCTCACCGCCGATATAGCGAACTGTACTAATCTCCAGCACATCAACCTTTCCTCGAACCTCATCGTGGGTCTCATCCCCGAAACACTCTCCCAAATCCCAGCTCTTCGCTACCTGGACCTCTCTTTTAACAACTTATCCGGCGATATTCCGGCACGTTTCGGCGAGTTCCAGAAACTTGAAACTCTTATGCTCGTTGGTAATTTGCTAAACGGAACAATACCCAGTTCTCTTGGCAACATTTCTACCCTGAAAGTCCTTAGTCTTGCCTATAATCCCTTTACCTCCAGTCCAATACCGTGTGAATTCGGTAGCTTGGTGAATCTTGAGGAGCTGTGGTTCAGTTATAGTAATCTTATCGGTTCAATTCCGTCAAATTTGACCCGTCTCACTAAACTCAAGAACCTCGACTTGTCCGGCAACAAGCTCAGTGGGTCTATCCCGAGTTCAATTATCGAGTTGGCGAGCATAGTACAAATTGAGCTCTTTGATAACTCTCTTTCCGGCGAGTTACCGGCAGGAATGTCCAACTTGACAGCTTTGAGGAGATTCGATGCATCTACGAACAACCTAACTGGGTCTATTCCTGATGAATTGTGCAGTCTGCCACTTGAATCACTTAATTTGTTCGAAAATGGATTTGAAGGGTCTCTGCCCGCGAGTATAGCCAGGTCTCCGAATCTATACGAGCTAAAGTTGTTTAGCAACAACCTCAGTGGGCCACTACCGAGTGATCTTGGCAAAATCTCGCCTTTGCAATATATTGACGTTTCCTATAATCAATTTTACGGAGAAGTCCCGGCGAATTTGTGTGCACGGGGCGTCTTAGAAGAACTTGTTCTTATATACAATTCATTTTCTGGTATAATTCCCGATAGTCTCGGAAAGTGTCGGAGCTTGAGGCGTATTCGGCTTAGGAATAATAAGCTTTCAGGCTCGGTTCCTGATACATTTTGGGGTCTACCTCATCTATATTTGCTCGAGCTTCTTGATAATTCTCTATCTGGGCAAATTTCTACTGCAATTTCTGGTGCAAATAATTTGTCAGTTCTATTAATTTCGAACAACCACTTCACCGGATCGATTCCTGATGAAATTGGGTCGTTAACAAATCTCGTTGAATTCGTTGCCCTCCATAACAGTTTTACTGGTGGAATTCCAGCCAGCATGGTGAAGCTGAGCCAGTTGGGTAAGCTTGATCTCAGTGACAATCAAATTTCCGGGAAAATTCCAGGGGGCATTCAAGCTTTAAAGAAGCTCAACGAGCTTAATTTGGCAAATAATAAGTTGGATGGTGAGATTCCAAGAGAAATTGGCAGCTTGCCAGCGCTTAATTATCTTGATCTTTCTGGCAATAGATTATCTGGTGAAATCCCACTTGAGTTGGAAAATTTGAAGCTCAATTTGCTAAACTTGTCAAACAATCACCTTTCTGGAAACATTCCTCCTTCCTTTGCCAATCAGAATTATATTGATAGTTTTGAGGGAAATCCAGGCCTCTGTGGTGACCCCTCTGGACTTTGTCTAAGCTATAGTGAAAGTAAGAACAGGAGGAATTTGTGGATTTTTCGATCAATGTTCATGCTGGCTGGAATTGTGTTTATGGTTGGAGTTGTCTGGTTTTACTGCAAATACAGGAACTtcaagaagatgaaaaagggATTTACCATATCTAAGTGGAAGTCATTTCATAAGCTAGGATTCAGCGAGTATGAGATTGTTAAATTGCTGAATGAAGATAATGTAATCGGATCCTATGGCTACATTGCACCAGAATATGCTTACACTCTTCGGGTGAATGAAAAAAGTGACATTTACAGCTTTGGCGTGGTGATTTTGGAATTGGTAACTGGGAGACTACCCGTCGATGCTGAATATGGAGAGAAAGATTTGGTAAAGTGGGTTTCCTCCACATTGAATCAGAAAGGAATAGAACACGTGATTGATCCAACTCTGGATACCATTCACATGGAAGAAATAAGGAAGATGCTCGATGTGGGACTCGTCTGCACCAGTTCTCTTCCAATAAACAGGCCATCCATGAGAAGAGTGGTGAAAATGTTGCACGAAGCTTCTCCGGGTTTCCAATCCAAGTCTATCAAGAAGGATGGCATATTATCCCCATATTATCATAATGAAGAGGCCTCTGATCAGGGGAGCCTTGTTTTGAGCTATGTGCTTAAAGATTA 2492 0.4306 MLLLFVFLFSLSSPLTSSLNQDGLFLWQAKLQLSDPTNALSNWNERDATPCAWHGVVCDNATGNVIQLDLTNSQLEGPFPITLCRIPSLTYISLSENSINSSLTADIANCTNLQHINLSSNLIVGLIPETLSQIPALRYLDLSFNNLSGDIPARFGEFQKLETLMLVGNLLNGTIPSSLGNISTLKVLSLAYNPFTSSPIPCEFGSLVNLEELWFSYSNLIGSIPSNLTRLTKLKNLDLSGNKLSGSIPSSIIELASIVQIELFDNSLSGELPAGMSNLTALRRFDASTNNLTGSIPDELCSLPLESLNLFENGFEGSLPASIARSPNLYELKLFSNNLSGPLPSDLGKISPLQYIDVSYNQFYGEVPANLCARGVLEELVLIYNSFSGIIPDSLGKCRSLRRIRLRNNKLSGSVPDTFWGLPHLYLLELLDNSLSGQISTAISGANNLSVLLISNNHFTGSIPDEIGSLTNLVEFVALHNSFTGGIPASMVKLSQLGKLDLSDNQISGKIPGGIQALKKLNELNLANNKLDGEIPREIGSLPALNYLDLSGNRLSGEIPLELENLKLNLLNLSNNHLSGNIPPSFANQNYIDSFEGNPGLCGDPSGLCLSYSESKNRRNLWIFRSMFMLAGIVFMVGVVWFYCKYRNFKKMKKGFTISKWKSFHKLGFSEYEIVKLLNEDNVIGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRLPVDAEYGEKDLVKWVSSTLNQKGIEHVIDPTLDTIHMEEIRKMLDVGLVCTSSLPINRPSMRRVVKMLHEASPGFQSKSIKKDGILSPYYHNEEASDQGSLVLSYVLKD 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00660 830 Gene3D Transferase(Phosphotransferase) domain 1 663 806 - -
Bva09g00660 830 ProSiteProfiles Protein kinase domain profile. 491 793 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bva09g00660 830 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 2 686 - -
Bva09g00660 830 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 685 815 - -
Bva09g00660 830 SMART LRR_sd22_2 494 526 - -
Bva09g00660 830 SMART LRR_sd22_2 207 230 - -
Bva09g00660 830 SMART LRR_sd22_2 231 257 - -
Bva09g00660 830 SMART LRR_sd22_2 158 184 - -
Bva09g00660 830 SUPERFAMILY Protein kinase-like (PK-like) 682 791 IPR011009 -
Bva09g00660 830 Pfam Leucine rich repeat 496 555 IPR001611 GO:0005515
Bva09g00660 830 Pfam Leucine rich repeat 109 147 IPR001611 GO:0005515
Bva09g00660 830 Pfam Leucine rich repeat 377 435 IPR001611 GO:0005515
Bva09g00660 830 Pfam Leucine Rich Repeat 233 252 IPR001611 GO:0005515
Bva09g00660 830 Gene3D Ribonuclease Inhibitor 306 612 IPR032675 -
Bva09g00660 830 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Bva09g00660 830 Pfam Protein tyrosine and serine/threonine kinase 686 788 IPR001245 GO:0004672|GO:0006468
Bva09g00660 830 PRINTS Leucine-rich repeat signature 234 247 - -
Bva09g00660 830 PRINTS Leucine-rich repeat signature 542 555 - -
Bva09g00660 830 SUPERFAMILY RNI-like 261 590 - -
Bva09g00660 830 ProSiteProfiles Leucine-rich repeat profile. 233 255 IPR001611 GO:0005515
Bva09g00660 830 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 2 686 - -
Bva09g00660 830 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 685 815 - -
Bva09g00660 830 SMART LRR_typ_2 111 133 IPR003591 -
Bva09g00660 830 SMART LRR_typ_2 279 303 IPR003591 -
Bva09g00660 830 SMART LRR_typ_2 518 541 IPR003591 -
Bva09g00660 830 SMART LRR_typ_2 134 158 IPR003591 -
Bva09g00660 830 SMART LRR_typ_2 231 255 IPR003591 -
Bva09g00660 830 SMART LRR_typ_2 86 110 IPR003591 -
Bva09g00660 830 SMART LRR_typ_2 398 421 IPR003591 -
Bva09g00660 830 SMART LRR_typ_2 494 517 IPR003591 -
Bva09g00660 830 SMART LRR_typ_2 542 566 IPR003591 -
Bva09g00660 830 ProSiteProfiles Leucine-rich repeat profile. 544 567 IPR001611 GO:0005515
Bva09g00660 830 SUPERFAMILY L domain-like 32 368 - -
Bva09g00660 830 Gene3D Ribonuclease Inhibitor 19 178 IPR032675 -
Bva09g00660 830 Gene3D Ribonuclease Inhibitor 185 305 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00660 Bva-Chr9 3426390 3429718 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00660 683 823 Receptor kinase-like Gene Family AT1G28440 71.034 2.42e-54 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Bva09g00660 PK_Tyr_Ser-Thr 3.9e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00660 - - mnt:21393816 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00660 09 3426390 3429718 Bva09g00660 09 3426390 3429718 ECH