Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00647 ATGGCAGTGAAGGAAAGACCGAGTGTTAAGAAGGCAAACCATGCCGCGACCAATGCCAAAGAGGTTCACTTTAGAGGCGTTCGAAAGAGGCCGTGGGGCCGCTATGCCGCTGAAATCCGAGACCCCGGCAAGAAGAGCCGTGTTTGGTTGGGGACCTTCGACACGGCGGAGGAGGCAGCCCGAGCCTACGACGCTGCCGCCAGGAAATTCCGTGGCCCCAAGGCCAAGACAAATTTCCCTTTGCCAGACGGGAGCGTTCAAAACGGGAATCAGAGTCCTAGCCAGAGTAGCACCGTCGAGTCCACCAGCAGAGATGTGCCGGAGCGTGAGGTCACGCGCCGATGTAATGTTGGTTATGTTGTGGATCGATTCCCGTTTCTCCCGTTGCAGCCACATCCCATGACGTACGGTGGTGGTCCTACTGGAGCTGTTGTCGAGGGTCTGCAGGTAGCTCCCGTGCGACCCGTTTTCTTTATTGACCCAACCGCACGTAGGGCCGAGTTTGTGGCTCAGCCTTATCCTGTCCGGTTCGAACCTTCGCCGGTACGGTTTAATACTGGTTTTGGCCTTGGGAGTGGGGCTCAGAGTGACTCGGATTCATCTTCCGTCGTTGATTGCCAACCTAAAAAAGCTATTAATCTTGATCTTAATCTCGCTCCTCCCATGGATGCCTA 674 0.5564 MAVKERPSVKKANHAATNAKEVHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDAAARKFRGPKAKTNFPLPDGSVQNGNQSPSQSSTVESTSRDVPEREVTRRCNVGYVVDRFPFLPLQPHPMTYGGGPTGAVVEGLQVAPVRPVFFIDPTARRAEFVAQPYPVRFEPSPVRFNTGFGLGSGAQSDSDSSSVVDCQPKKAINLDLNLAPPMDA 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00647 224 Pfam AP2 domain 23 72 IPR001471 GO:0003700|GO:0006355
Bva09g00647 224 MobiDBLite consensus disorder prediction 72 109 - -
Bva09g00647 224 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 207 - -
Bva09g00647 224 SMART rav1_2 23 86 IPR001471 GO:0003700|GO:0006355
Bva09g00647 224 Gene3D AP2/ERF domain 22 81 IPR036955 GO:0003700|GO:0006355
Bva09g00647 224 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700|GO:0006355
Bva09g00647 224 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700|GO:0006355
Bva09g00647 224 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700|GO:0006355
Bva09g00647 224 MobiDBLite consensus disorder prediction 81 102 - -
Bva09g00647 224 CDD AP2 23 80 IPR001471 GO:0003700|GO:0006355
Bva09g00647 224 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 9 207 - -
Bva09g00647 224 MobiDBLite consensus disorder prediction 1 23 - -
Bva09g00647 224 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00647 Bva-Chr9 3371725 3372621 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00647 11 222 AP2-EREBP Transcription Factor Family AT5G44210 46.083 3.07e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva09g00647 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00647 K09286 - qsu:112001675 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00647 09 3371725 3372621 Bva09g00887 09 4573901 4574990 ECH
Bva09g00647 09 3371725 3372621 Bva07g01728 07 16072171 16073170 ECH
Bva09g00647 09 3371725 3372621 Bva09g00647 09 3371725 3372621 ECH
Bva09g00647 09 3371725 3372621 Bva14g01411 14 7038459 7039524 ECH
Bva09g00647 09 3371725 3372621 Bva13g01161 13 5799304 5800383 ECH