Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00644 ATGCTGATCTCAAATGCTGTGCAGCCACGattctcctttctctctcttaaacCACCCTATATAATGCCACCATTGTTTCCCTCCACTTCTACATTGATTAATGTCCTTTCTcatatctctttctctcatcCAACACCAAGGTGGGTATTGCCAGCCAAAATGAGCACTACTGTCTCTGCTGAGCAGCATAAGTTTCATCATCCCTCTCCCCATCTTCAGAAGAAATCGCTTAACAGAGACATTGACATCCCGCCCCGGAAGCTACTCACTCGCCGTGCCAATGCCGGTGCTGCTATTGCTGCTGACTCACCACGGTTCTCCTCGGCTGAGGAGACCCTCTTGCAGAAATTCCTTCCCTATAACAATCTCGTGGAGTCTGATGATGAATCTGACCCCTATTCTTCTGATCACTTCCGCATGTATGAATTCAAGGTCGGTCGATGCACTCGTAGCAGGAGTCATGACTGGACGGATTGCCCATTTGCTCACCCAGGAGAGAAAGCTCGCCGGCGTGACCCCAGAAAGTATCACTACTCGGGTACTGTTTGCCCAGAGTATCGCCGTGGTGGATGCAGCCGCGGGGATAGCTGCGAGTTTGCTCATGGGGTGTTTGAGTGCTGGCTGCATCCAGCTAGGTACCGAACTGAAGCTTGCAAGGATGGAAAGAATTGCAAGCGAAAGGTATGCTTTTTCGCTCACACTCCTCGCCAACTCAGGATTTTGCCTGTGAACTCCTATGATTCTTCAGCTGACATTTCATGCAAGAATAGCAAATTCTTGAACAACAACTGCTGCTTGTTTTGCCATTGCTCCTCAACTTCCTCTCCAACTTCTACTCTGTTGAGCATGTCTCATTTCTCCCCGCCACTGTCACCGTCATCGTCCTCTGTCTCACCGCCTCTATCACCGGTCAAACAACGCTGGACTGCAAATGGGTTCTCGCCTATTTCACGATACAGTGATAGATTTGGGGGATCTGAGACATCAAGTGGGCTGAATCATGGGGTGTTTAGCTACAAAGATGTGCTCACCGAGTTGATGAGCTTCTTGGAGGGTCTGAATTTTTGTGAAGCTTCAGCTGTTTCTGCTTCTGCTCATAAGGCATCAAATCTGCCTTGGGTTGATGcttcttttaactttgaagATCAACAGCTGCAGCAGTTCATTCTTTCACCAACTACTTCTTTCAATTGTGAAGATCAACAGCAATTTATTCTTTCACCATTCACTCAGACCCCAACTTCATCTGGGTCTGTAAATTTTTCAGATGGGAACTATTCCAGCAATGAGAGCAAGGTTGTTACTGATAATGGGTCATCATGCCCGGCCCCAGATCTCGGGTGGGTCAATGATCTGCTGATGTA 1364 0.4626 MSTTVSAEQHKFHHPSPHLQKKSLNRDIDIPPRKLLTRRANAGAAIAADSPRFSSAEETLLQKFLPYNNLVESDDESDPYSSDHFRMYEFKVGRCTRSRSHDWTDCPFAHPGEKARRRDPRKYHYSGTVCPEYRRGGCSRGDSCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNSYDSSADISCKNSKFLNNNCCLFCHCSSTSSPTSTLLSMSHFSPPLSPSSSSVSPPLSPVKQRWTANGFSPISRYSDRFGGSETSSGLNHGVFSYKDVLTELMSFLEGLNFCEASAVSASAHKASNLPWVDASFNFEDQQLQQFILSPTTSFNCEDQQQFILSPFTQTPTSSGSVNFSDGNYSSNESKVVTDNGSSCPAPDLGWVNDLLM 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00644 401 ProSiteProfiles Zinc finger C3H1-type profile. 125 151 IPR000571 GO:0046872
Bva09g00644 401 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 129 149 IPR000571 GO:0046872
Bva09g00644 401 MobiDBLite consensus disorder prediction 1 26 - -
Bva09g00644 401 SMART c3hfinal6 159 182 IPR000571 GO:0046872
Bva09g00644 401 SMART c3hfinal6 124 150 IPR000571 GO:0046872
Bva09g00644 401 Gene3D - 124 188 - -
Bva09g00644 401 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 27 400 - -
Bva09g00644 401 PANTHER UNKEMPT FAMILY MEMBER 27 400 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00644 Bva-Chr9 3353604 3355635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00644 80 186 C2H2 Transcription Factor Family AT5G07500 70.093 3.16e-52 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bva09g00644 zf-CCCH 1.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00644 K23047 - jre:108986638 450.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00644 09 3353604 3355635 Bva09g00644 09 3353604 3355635 ECH