Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00641 ATGCCTGCTCAGAAGCGGTCTTTGGCGGAGGCTCTGGACGACGGAGAGACTTCACAGCTCAACCACCAGCGCCATGCCAAGCAATCTCAGCGCGACCATGAACTCAAGAGTGAGGAGGAACGAGATGAGGAAGATGAGCAGAAGCAGCAGCAGctggaagaagaaggagatggTGAGGATGGAGGACAACAGCAACACCAGCTAGAAGAAGACAAAGCAAAACCAGAGGATTCTGAGGAAAGCCCATCTTCTGGTCCTGGAGAAAAACCCGAaTTTGTGTATGTAGAACTTCCAGAAATTCGTAAAGACGTCCAATGTCCAATTTGCCTTGGTATTATTAAGAAAACACGAACTGTTATGGAATGCTTGCACAGGTTTTGCAGGGAATGCATTGATAAGTCAATGCGACTAGGGAACAATGAATGTCCTGCTTGCCGTACACACTGTGCCAGTCGTCGTTCTTTGAGGGATGATCCAAACTATGATGCATTAATTGCTGCTTTATACCCAGATATTGAGAAGTATGAGGAAGAGGAGCTTGAATTTCGTGAAGAGGAGCAAACACGCAATAAGCAGATTCAAGCTTCAATTGCAAAAGTGGTGCAACGACAATCTGAAGCACTGGTTAAGAGACGTACTAAAGATTCACCTGGTGGTGCCTTTGTGACAAGATCTCAGCGCAATCATCGAAATGTTCAGTCTAGGAGACAAAACCAAGTAATTGATCTTCAAGGATCTGATAATGATGAGGAAAACGATAATAATGGAGAAAAAGACTCATCTTCCACTGATGAACGGTGTGCAGAACTCAGCAAGAGAAGGCGAAAGAGACGGGCCAGAGTTCGTCCCTCACCATCAATGGCTAGCCCAGATGGTGAAGGTATGGACAGTGATGTGGATATGGGCAGGGAAAATCGAGGAATTTCTTCAAGGCAGGTGTCAAAGCCTCGAAAACTTACTTGGGGAAGAGGAGGTTTTAGGAGTCACACCCGATATGGCGTAGGTGCTGGTGGCAATAACAAGAGCGCCCGCAGCACTCGATTGTCTAAGCTGGTTGATTACCTCCGAAACTTGGATGAAAATGGTGATGAGTTGGATGTCCATCTCATGCTTGTTTCTTTGGATAAACAAAGTACACCAAGTTTGCAGAAACCGCACCTTTGTTGTCGGCCAACTTTGTCTGTCAAGCACCTTTGTGAATATGTGGCTTGTGAGACACCCTTGCCAGCTGAAGAAGTTGAGATATTGGCAGTTAAAGCATGTAATAGTATAGATTGTGATGAGTCAGCTGGTGAGACTCCATCCAAAGATGAATTGGCAACGCTGGTTGTAGATGCATGCAAAGATGAACTGGAAATTTTGCAAGGACATGAAACCTTGGCAGGGCTTAGATTCAAATGCATATCTAAGAGGGAGCATATGATTCTGGCATACAGGCGGAAGGAGATTATgaaagtata 1460 0.4452 MPAQKRSLAEALDDGETSQLNHQRHAKQSQRDHELKSEEERDEEDEQKQQQLEEEGDGEDGGQQQHQLEEDKAKPEDSEESPSSGPGEKPEFVYVELPEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDIEKYEEEELEFREEEQTRNKQIQASIAKVVQRQSEALVKRRTKDSPGGAFVTRSQRNHRNVQSRRQNQVIDLQGSDNDEENDNNGEKDSSSTDERCAELSKRRRKRRARVRPSPSMASPDGEGMDSDVDMGRENRGISSRQVSKPRKLTWGRGGFRSHTRYGVGAGGNNKSARSTRLSKLVDYLRNLDENGDELDVHLMLVSLDKQSTPSLQKPHLCCRPTLSVKHLCEYVACETPLPAEEVEILAVKACNSIDCDESAGETPSKDELATLVVDACKDELEILQGHETLAGLRFKCISKREHMILAYRRKEIMKV 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00641 486 CDD RING-HC_RING1_like 106 146 - -
Bva09g00641 486 MobiDBLite consensus disorder prediction 9 38 - -
Bva09g00641 486 MobiDBLite consensus disorder prediction 59 84 - -
Bva09g00641 486 ProSitePatterns Zinc finger RING-type signature. 122 131 IPR017907 -
Bva09g00641 486 Coils Coil 175 195 - -
Bva09g00641 486 Pfam Zinc finger, C3HC4 type (RING finger) 105 145 - -
Bva09g00641 486 MobiDBLite consensus disorder prediction 255 271 - -
Bva09g00641 486 MobiDBLite consensus disorder prediction 219 245 - -
Bva09g00641 486 MobiDBLite consensus disorder prediction 208 343 - -
Bva09g00641 486 Coils Coil 35 55 - -
Bva09g00641 486 MobiDBLite consensus disorder prediction 39 58 - -
Bva09g00641 486 PANTHER OS11G0578200 PROTEIN 1 482 IPR044592 -
Bva09g00641 486 MobiDBLite consensus disorder prediction 1 90 - -
Bva09g00641 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 100 169 IPR013083 -
Bva09g00641 486 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 482 - -
Bva09g00641 486 ProSiteProfiles Zinc finger RING-type profile. 106 146 IPR001841 -
Bva09g00641 486 SUPERFAMILY RING/U-box 96 160 - -
Bva09g00641 486 SMART ring_2 106 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00641 Bva-Chr9 3338135 3343985 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00641 99 169 C3H Transcription Factor Family AT3G23060 35.135 3.77e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00641 K10695 - gmx:100776547 608.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00641 09 3338135 3343985 Bva09g00641 09 3338135 3343985 ECH