Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00640 ATGGAAGCTGGGAAAATTGATGGGTTTAAGCCAAAGGTGGGGAACGTGAGAGTGGTGAAACGGGAGGCTTCAGGGGATTATGATGAGGAAAATGGCTACGTGGAGGTggataataagaaaatttgcgTTGGTGGGTCTGGGAAGAAAGGGTCCGGTGGTGTTCGCGGCGGAAGTAGCATGCGGTGTTGTCAAGCGGAGAAGTGCACGGTGGATCTTAGTGATGCGAAGCAGTATCATAGGAGGCACAGGGTGTGTGAGTATCATGCTAAGGCTCAGGTAGTGCTTGTGGGTGGCATGCGCCAACGGTTTTGTCAGCAATGTAGCAGATTCCATGAGTTAGCTGAATTTGACGATACGAAAAGAAGTTGCCGCAGGCGTTTGGCTGGACATAATGAACGGCGAAGAAAGAATTCGGAATCTCAAGCAGAAGGCTCGACTCGGAAAGGGACAGGCTCTCAGTTGAAGGACATTGTTTGTGGACAGATTGATGACAGGGGGAGAATTCAGATAACCATTCAAGAAAATGCCACTCTCAAACATTTCCAGATAAGATG 554 0.4747 MEAGKIDGFKPKVGNVRVVKREASGDYDEENGYVEVDNKKICVGGSGKKGSGGVRGGSSMRCCQAEKCTVDLSDAKQYHRRHRVCEYHAKAQVVLVGGMRQRFCQQCSRFHELAEFDDTKRSCRRRLAGHNERRRKNSESQAEGSTRKGTGSQLKDIVCGQIDDRGRIQITIQENATLKHFQIR 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00640 184 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 37 184 - -
Bva09g00640 184 MobiDBLite consensus disorder prediction 127 151 - -
Bva09g00640 184 SUPERFAMILY SBT domain 61 140 IPR036893 GO:0003677|GO:0005634
Bva09g00640 184 Gene3D - 53 124 IPR036893 GO:0003677|GO:0005634
Bva09g00640 184 ProSiteProfiles Zinc finger SBP-type profile. 60 137 IPR004333 GO:0003677
Bva09g00640 184 Pfam SBP domain 63 136 IPR004333 GO:0003677
Bva09g00640 184 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 37 184 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00640 Bva-Chr9 3334225 3336269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00640 48 184 SBP-box Gene Family AT3G15270 56.643 5.80e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bva09g00640 SBP 4.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00640 - - jre:108986645 247.669
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00640 09 3334225 3336269 Bva07g01735 07 16110173 16111719 ECH
Bva09g00640 09 3334225 3336269 Bva09g00640 09 3334225 3336269 ECH
Bva09g00640 09 3334225 3336269 Bva14g01400 14 6984736 6986473 ECH
Bva09g00640 09 3334225 3336269 Bva13g01153 13 5750559 5752168 ECH