Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00636 ATGGCATGCTTGGGGTTTGATATGGTTGACAGtgagaattttgagatttttaagAGGAGGGGAGTAGGGTTCCTATTCCAGATTGTGTTTGGATGCTGGGTTGTTGTAGTGTTTCTTTCTCCTGTGGCAGGTCTGAGACCGTTAAGGGAAAGAACTCGGTCGTGGGGCGATGAGTGGCTATATACAAGGAAAGAGGAAAGTGAGTTGAGCCCATTTTCACAATGGAACATAACCGGCACTTATAGAGGAACTTGGAAATTTTTGGATTCTGCAAATGGATCTTCCAGGTTTCCAGATATTAGAAAAACCAGTGGCAATTCTGTCATAGAATTAGTTAGTACACCAACAAAAATAACTGGTGTGCATTATGTTCAGGGAGTAGTTATATTCCATGATGTGTTTGACAGCGAATATAATGTTGGTGGTGCTCAAATCAGATTAGacggtgtatatatatggccTTTTAGACAGCTTCGTATGGTAGCCAACAGTGGAAAAGAGGGGGAGTTGAATGAGGAGGATGATTACATTTTATCTAATCCATATCATCTGCTTGGAGTATTCTCATCCCAGGTATTCCAAGAATCTCCACGAGATAAGATATGGAGAAAGAAACATTCTCTGATGCACGATATGGATAAACATTGTAATATTGAAATTGCTGCACAGATCTCACGTCTATCGTCATCAAAAAATGATGGGGATCGTGATTGTTTTCACCTGGATGGGTTAATGGAGAGTCCTTCCCTAGATGATGGTGGGGACTGCTTCCCACCTTTGCTGTTAAATGCAACTTCTGTTAACATTGAGGTCTATTATAATAAAGCAGTGAACTACACCTTGATGGTGACCTTTGTGTCTTTCTTGCAAATTCTTCTATTGATTCGGCAAATGGAGCACAGCAACACTCAATCTGGAGCTGCCAAGGTTTCAATATTAATGATAGGCCAGCAGGCTATAATGGATGCTTATCTTTGCCTTTTACATCTGACTGCAGGAATATTAGTAGAATCCTTATTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTCGTGGTCTTCTCTATATTTGAGATGAGATATCTTCTTGCAATATGGAAGGCAAGTAGGCCTTTGAGTAATGGGGAAGGTTGGGAGACAATGAGGCGAGAGCTTTCAGTTTTATACAGTCGATTCTATGGGATTCTATTGGGAGGCATTCTGCTCGTGTATGAGTtccataattatttgaaacctattcttcttcttgtgtACTCGTTTTGGATACCTCAGATAATCACCAATGTAGTTCGAGATTCCCGGAAACCATTGCATCCTCATTACATCCTAGGGATAACGGTCACTCGGCTAGCAATCCCTTTATATGTTTTTGGTTGCCCTGACAACTTCATGCGCATTGAACCAGACAAGAGCTGGTGTGTGTGTTTGGTTGTATTTATTGGACTTCAATCTGCAATTCTTCTACTTCAGCATTATCTTGGGTCTCGTTGGTTCATTCCTCATCAGATTCTACCTGAGAAATACAGCTATTATAGGAGGTTTGATCAAGATACTAATCATGCCACAGACTGTGTTATTTGCATGACCGCCATTGATCTTACGCAGCGATCTAGTGATTGCATGGTGACACCTTGTGATCATTTCTTCCATTCCGGTTGTTTGCAAAGATGGATGGATGTAAAGATGGAGTGCCCAACTTGCCGGCGCCCACTGCCACCCGCCTG 1724 0.4008 MACLGFDMVDSENFEIFKRRGVGFLFQIVFGCWVVVVFLSPVAGLRPLRERTRSWGDEWLYTRKEESELSPFSQWNITGTYRGTWKFLDSANGSSRFPDIRKTSGNSVIELVSTPTKITGVHYVQGVVIFHDVFDSEYNVGGAQIRLDGVYIWPFRQLRMVANSGKEGELNEEDDYILSNPYHLLGVFSSQVFQESPRDKIWRKKHSLMHDMDKHCNIEIAAQISRLSSSKNDGDRDCFHLDGLMESPSLDDGGDCFPPLLLNATSVNIEVYYNKAVNYTLMVTFVSFLQILLLIRQMEHSNTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWETMRRELSVLYSRFYGILLGGILLVYEFHNYLKPILLLVYSFWIPQIITNVVRDSRKPLHPHYILGITVTRLAIPLYVFGCPDNFMRIEPDKSWCVCLVVFIGLQSAILLLQHYLGSRWFIPHQILPEKYSYYRRFDQDTNHATDCVICMTAIDLTQRSSDCMVTPCDHFFHSGCLQRWMDVKMECPTCRRPLPPA 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00636 574 Pfam Ring finger domain 523 568 IPR001841 -
Bva09g00636 574 SUPERFAMILY RING/U-box 505 573 - -
Bva09g00636 574 ProSiteProfiles Zinc finger RING-type profile. 524 568 IPR001841 -
Bva09g00636 574 SMART ringv_2 523 568 IPR011016 GO:0008270
Bva09g00636 574 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 14 574 - -
Bva09g00636 574 SMART ring_2 524 567 IPR001841 -
Bva09g00636 574 PANTHER RING ZINC FINGER PROTEIN 14 574 - -
Bva09g00636 574 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 510 574 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00636 Bva-Chr9 3315530 3321973 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00636 524 571 C3H Transcription Factor Family AT4G12190 37.500 2.42e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00636 K23788 - qsu:112035018 1025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00636 09 3315530 3321973 Bva09g00636 09 3315530 3321973 ECH