Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00605 ATGCAGCGCCACTCTAGCTCCACCTTCTTCTTGAACTTCTGCTTGAGCTTGGCATTGCAAGTTCTGGTCGTATGCGGACAGGGGCAGCCTCAGAATCATGGTCTCGACCTGCATTGGTACCCTGGCACCGGAACCTGGTACGGCGAACCCGAAGGAGACGGTAGCACCGGTGGGGCATGCGGGTACGGTACCATGGTGGACGTGAAGCCGTTGAGGGCACGGGTAGGTGCAGTGGGTCCGGGACTGTTTAAGAACGGGGAAGGGTGTGGGGCATGCTACAAGGTGAAGTGCTTGGACAAGAGCATATGCTCGAGGCGAGCCGTGACGGTTATAATCACCGACTATTGTCCAGGTTGCCCCTCCGACCGCCCCCACTTCGACCTCAGTGGTGCCGCATTTGGCCGCATGGCTATAGCTGGTGAGAACGGTCAACTCAGAGACAGAGGTCAAATTCCAGTCATTTACCGCAGAACACCATGTAAATATCCGGGCAAAAACGTAGCCTTCCATGTCAATGAAGGTTCCACAGAGTATTGGCTGTCACTTTTGGTGGAGTTTGAGGATGGGGATGGAGACATTGTCTCCATGCACATCCACGAAGCAGGGTCAAGTGAGTGGCTACCGATGAATCATCTTTGGGGTGCAAATTGGAACATCATCGGAGGACCTTTAAGGGGACCGTTTTCTGTGAAGCTAAGTACATCTACAGGAAAAACTCTATCTGCCACAGATGTGATTCCAGGCAATTGGTCTCCAAAAACCACTTACACCTCACGCCTAAATTTCAACTATTA 794 0.5252 MQRHSSSTFFLNFCLSLALQVLVVCGQGQPQNHGLDLHWYPGTGTWYGEPEGDGSTGGACGYGTMVDVKPLRARVGAVGPGLFKNGEGCGACYKVKCLDKSICSRRAVTVIITDYCPGCPSDRPHFDLSGAAFGRMAIAGENGQLRDRGQIPVIYRRTPCKYPGKNVAFHVNEGSTEYWLSLLVEFEDGDGDIVSMHIHEAGSSEWLPMNHLWGANWNIIGGPLRGPFSVKLSTSTGKTLSATDVIPGNWSPKTTYTSRLNFNY 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00605 264 PANTHER EXPANSIN-LIKE PROTEIN B1 12 263 - -
Bva09g00605 264 Pfam Lytic transglycolase 80 153 IPR009009 -
Bva09g00605 264 PRINTS Major pollen allergen Lol pI signature 115 130 IPR005795 GO:0005576|GO:0019953
Bva09g00605 264 PRINTS Major pollen allergen Lol pI signature 234 251 IPR005795 GO:0005576|GO:0019953
Bva09g00605 264 PRINTS Major pollen allergen Lol pI signature 137 152 IPR005795 GO:0005576|GO:0019953
Bva09g00605 264 PRINTS Major pollen allergen Lol pI signature 77 88 IPR005795 GO:0005576|GO:0019953
Bva09g00605 264 PRINTS Major pollen allergen Lol pI signature 185 200 IPR005795 GO:0005576|GO:0019953
Bva09g00605 264 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576|GO:0019953
Bva09g00605 264 SMART dpbb_1 75 155 IPR007112 -
Bva09g00605 264 Gene3D - 26 160 IPR036908 -
Bva09g00605 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 57 165 IPR007112 -
Bva09g00605 264 SUPERFAMILY Barwin-like endoglucanases 38 164 IPR036908 -
Bva09g00605 264 Gene3D - 161 259 IPR036749 -
Bva09g00605 264 SUPERFAMILY PHL pollen allergen 165 258 IPR036749 -
Bva09g00605 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 178 258 IPR007117 -
Bva09g00605 264 PRINTS Expansin/Lol pI family signature 56 74 IPR007118 GO:0005576
Bva09g00605 264 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576
Bva09g00605 264 PRINTS Expansin/Lol pI family signature 38 53 IPR007118 GO:0005576
Bva09g00605 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576
Bva09g00605 264 PRINTS Expansin/Lol pI family signature 244 258 IPR007118 GO:0005576
Bva09g00605 264 PRINTS Expansin/Lol pI family signature 79 97 IPR007118 GO:0005576
Bva09g00605 264 Pfam Expansin C-terminal domain 167 247 IPR007117 -
Bva09g00605 264 PANTHER EXPANSIN-B3 12 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00605 Bva-Chr9 3199431 3201946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00605 15 200 Expansin Gene Family AT4G28250 70.588 1.24e-91 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00605 K20628 - gmx:100804525 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00605 09 3199431 3201946 Bva09g00605 09 3199431 3201946 ECH