Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00597 ATGGCTGCGGCTAAGAACAGTAGAAAGTCCAACGAGGGTGCCGATGACATTCAGAAGATTACTCAGATGGGAGAAAGCCGATACTGGGGAATTGACGACGCCAAGGATCTAGATTTTAGCTTTCAGAGGCGGCAATGGAAGCCAGTTTTTGATGAAGCTTCCGTGTCACATAGGCCTCTCAAGAAGATCCGTAGCCCAGAACGTCAAAACCCGAATCCATCATCCTCTGTTTCACTGCAACCTCCTTCTTCCTCATTTACCTCTGCAATTCCTCCTACTACAGCGTCTTCTTCCAATATGTGTCCTCCTTCTTCGTCTTCCAGAATTGTGTTTCCTTTTGCCTTTGACGGTTCTCAACATCCTATGCAATTTCCCCACCAATTTGGGACCACAAATTTGCCCCTGTTTCGTCCACCGATTCAACCGACACAGCAGAATCAGCAGCAACAGATGATATCTTTTGGTCCCCGGCAACAAAACATTATGTACCCACAATTCCTTGTGCCAGATGTTGCCATGTCCCAGCAACAACATCAGCAGCAGCTTCTCCAATATTGGAGTGACACGCTGAATCTAAGTCCTCGAGGAAGaaggatgatgatgatgaatagGTTTGGGCCAGATGGCAGGCCATTGTTTAGGCCACCGGTGCAGCCTTTAAATACCACTAAGCTGTACAGGGGAGTAAGACAACGCCACTGGGGAAAATGGGTAGCTGAAATTCGTCTTCCTCGCAATAGAACTCGCCTCTGGCTAGGCACATTTGATACCGCAGAAGATGCTGCCTTGGCATATGATCGCGAAGCCTTTAAGTTGAGAGGTGAGAATGCAAGACTCAATTTTCCTGAGCTTTTTCGCAACAAGGATAAAGCACCGTCAACTACTCCAAATTCAGCTGCATCTTCTCCTCCAACGCCACATGAAGGTTCAACTTCCACGTCAAGTCAGACCTCAAAGCAACCCGATCCAGTTCAAGAAGGCCTTAATGTGCAGCCTATGAACACGGAGAGGGTGCCGCTGCCGGCGCTGCCACAACAGGAAGAGAATACTGACAATGATTCGGGATTTGGGTCGAGTGACATTACTGTGAGCGATGAAGTTCAAGCAGCAGCAGCTGCTGCAGGCAATGAAACAGGGGAAGGCATTTCACAGTCGCAGGAACTGGTTTGGGGAGAAATGGCGGCTTGGTTCAACGCAATTCCAGCAGGTTGGGGTCCCGGAAGCCCTGTGTGGGATGATTTGGACACCAACAATAATCTTCTCTTTCCGTCGTCACAGCTTCCATTTCTCAATCCAAATCAACAAGATTTTAACCATGCCGATGCTCGGAGAGAAGATGATAACACAGGAGCAGGTTCTTCCACTTGTCCCATGAGGGACTTCTTCTCGAAGGTTCAAGATTG 1403 0.479 MAAAKNSRKSNEGADDIQKITQMGESRYWGIDDAKDLDFSFQRRQWKPVFDEASVSHRPLKKIRSPERQNPNPSSSVSLQPPSSSFTSAIPPTTASSSNMCPPSSSSRIVFPFAFDGSQHPMQFPHQFGTTNLPLFRPPIQPTQQNQQQQMISFGPRQQNIMYPQFLVPDVAMSQQQHQQQLLQYWSDTLNLSPRGRRMMMMNRFGPDGRPLFRPPVQPLNTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAALAYDREAFKLRGENARLNFPELFRNKDKAPSTTPNSAASSPPTPHEGSTSTSSQTSKQPDPVQEGLNVQPMNTERVPLPALPQQEENTDNDSGFGSSDITVSDEVQAAAAAAGNETGEGISQSQELVWGEMAAWFNAIPAGWGPGSPVWDDLDTNNNLLFPSSQLPFLNPNQQDFNHADARREDDNTGAGSSTCPMRDFFSKVQD 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00597 467 SMART rav1_2 225 288 IPR001471 GO:0003700|GO:0006355
Bva09g00597 467 MobiDBLite consensus disorder prediction 50 65 - -
Bva09g00597 467 MobiDBLite consensus disorder prediction 290 329 - -
Bva09g00597 467 MobiDBLite consensus disorder prediction 284 329 - -
Bva09g00597 467 ProSiteProfiles AP2/ERF domain profile. 225 282 IPR001471 GO:0003700|GO:0006355
Bva09g00597 467 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 464 - -
Bva09g00597 467 MobiDBLite consensus disorder prediction 50 103 - -
Bva09g00597 467 Pfam AP2 domain 226 274 IPR001471 GO:0003700|GO:0006355
Bva09g00597 467 Gene3D AP2/ERF domain 225 283 IPR036955 GO:0003700|GO:0006355
Bva09g00597 467 CDD AP2 224 284 IPR001471 GO:0003700|GO:0006355
Bva09g00597 467 SUPERFAMILY DNA-binding domain 225 283 IPR016177 GO:0003677
Bva09g00597 467 MobiDBLite consensus disorder prediction 67 103 - -
Bva09g00597 467 PRINTS Ethylene responsive element binding protein signature 226 237 IPR001471 GO:0003700|GO:0006355
Bva09g00597 467 PRINTS Ethylene responsive element binding protein signature 248 264 IPR001471 GO:0003700|GO:0006355
Bva09g00597 467 MobiDBLite consensus disorder prediction 345 360 - -
Bva09g00597 467 MobiDBLite consensus disorder prediction 341 360 - -
Bva09g00597 467 MobiDBLite consensus disorder prediction 425 467 - -
Bva09g00597 467 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 1 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00597 Bva-Chr9 3173004 3175424 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00597 1 413 AP2-EREBP Transcription Factor Family AT2G20880 39.808 1.97e-59 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bva09g00597 AP2 3.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00597 - - jre:109013328 516.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00597 09 3173004 3175424 Bva09g00597 09 3173004 3175424 ECH