Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00559 ATGGGAAGAGCACCTTGCTGTGACAAAAATGGACTCAAGAAAGGTCCGTGGACACCTGAGGAAGATCTTAAGCTCATCAACTATATCCAAACTCACGGACCAGGCAATTGGCGAACCCTCCCCAAGAATGCTGGTCTGCAAAGATGTGGCAAGAGTTGCCGCCTTCGATGGACTAATTATCTGAGACCCGACATCAAGAGAGGAAGATTCTCttttgaagaagaggaaaCGATTATTCAATTGCACAGTCTCTTGGGGAACAAATGGTCGGTTATTGCTGCCCGCTTGCCTGGGAGAACTgacaatgaaataaagaattacTGGAACACCCACATTAGAAAGAGACTTCTTCGGATGGGGATCGATCCAGTTACTCATGCCCCAAGGTTTGATCTACTTGACATATCTTCAATTCTGAGGTCAGCTTTGATCAACCCATCGCTTCTAAATCTGCAAGGCTTATTGGGTGCCCAAGAATTGATGAACCCAGAATTGTTGAAGCTAGCCAATACTCTGTTATGGTTGAAGAATGAGAATCCAGATTTGGTTTCACAGAATCTCCAACAAATCCAAGCTATGAATCCTCAAATGCAAAGCCAAGTTGCCCAACAAATGCAATTTAGTGAGTTTCTGACGCCGATTCCAAACAATGTGGAAAATTTCCCAGGTGATTTTACAAACATGAGCTGTTCAAATTCACAAGAGAATTCAATTCCTTCCTATCTGGGTGAGAACCTCATGGCGCAGACATGCCAAGTTGATTTTATGGGAAACCCAACCTTCGTCGAGCCTCTAAACAATGCAAAGCAAAGCTTGAGCTATGACTCTGTTCTTTCTACGTCTTTATCGAGCCCAACTCCATTAAATTCATCATCCACTTATGTGAATAGCAGTACAGAGGAGGAGAAAGATAGCTATTGCAGTGACTTGTTCAAGTTCCAAATTCCAGAGTATCTTGACATTAGTGACTTCTTGTA 977 0.4176 MGRAPCCDKNGLKKGPWTPEEDLKLINYIQTHGPGNWRTLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSLLGNKWSVIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRFDLLDISSILRSALINPSLLNLQGLLGAQELMNPELLKLANTLLWLKNENPDLVSQNLQQIQAMNPQMQSQVAQQMQFSEFLTPIPNNVENFPGDFTNMSCSNSQENSIPSYLGENLMAQTCQVDFMGNPTFVEPLNNAKQSLSYDSVLSTSLSSPTPLNSSSTYVNSSTEEEKDSYCSDLFKFQIPEYLDISDFL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00559 325 CDD SANT 69 112 IPR001005 -
Bva09g00559 325 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 320 - -
Bva09g00559 325 CDD SANT 16 61 IPR001005 -
Bva09g00559 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Bva09g00559 325 SMART sant 66 114 IPR001005 -
Bva09g00559 325 SMART sant 13 63 IPR001005 -
Bva09g00559 325 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Bva09g00559 325 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Bva09g00559 325 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Bva09g00559 325 Gene3D - 69 116 - -
Bva09g00559 325 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Bva09g00559 325 Gene3D - 13 66 - -
Bva09g00559 325 PANTHER TRANSCRIPTION FACTOR MYB41 1 320 - -
Bva09g00559 325 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Bva09g00559 325 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00559 Bva-Chr9 2984786 2986091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00559 1 325 MYB Transcription Factor Family AT4G21440 52.342 3.35e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bva09g00559 Myb_DNA-binding 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00559 K09422 - pvy:116107108 416.387
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00559 09 2984786 2986091 Bva07g02080 07 17774013 17775178 BWGD
Bva09g00559 09 2984786 2986091 Bva09g00559 09 2984786 2986091 ECH