Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00543 ATGAAGAACTGCGAGCTGTGCAAGGTTCCGGCGAGGACCTTCTGTGAGTCCGACGAGGCAAGCTTGTGCTGGGACTGCGACGCTAAGGTTCATGGAGCTAATTTCTTGGTAGCTAGGCACTCAAGGACTCTTCTATGCCACGCGTGCCAATCTCCCACGCCGTGGAAAGCCTCCGGTGCTAAGCTCGGCAACGCAGTTTCGGTCTGTGAGAGTTGTGCTGGTGGAATGAAAGTTAACAATGAAGGAACAGAAGAAAGCGAAGGAAATAATGACAACGAGATAGACACAGAGGACGATCTCGATGACGATGACTACGACGACGACAGCATGGCTGGCGAGGACGACGATGCGGTTGGCGGTGATGAAGACGGAGATAATCAGGTAGTCCCTTGGTCCTCCACGCCACCTCCACCGTCTGCAAGTTACTCGAGTAGCGAAGAGTCGGCTAACAGGTGTAATAACAGCGATAGAGATATTTCTGAAACGGGTACCATGATTTCGTTGAAGCGGAGGCGCGAGAATGCATCAGATCTTATGTTCCAGGAAGGTCTTAACGGTTGGTCGTCTCAACAGAGGCATCGTACGGAATTGACAGGAGAGGGGGCTTGGTTACCCGTTGACGGCGAAGGGTCATCGGTGGAGGTGGAGCCCTTGAAAGACGGAAAGACTACCAGAGCGGCGTCACATTCCGTGTTCACAAATGAATCTATACAGATATTTAAGAGGCCACGCAGTGCCAGGAATGGTGATACATTTGAAGCCGTTTG 767 0.5189 MKNCELCKVPARTFCESDEASLCWDCDAKVHGANFLVARHSRTLLCHACQSPTPWKASGAKLGNAVSVCESCAGGMKVNNEGTEESEGNNDNEIDTEDDLDDDDYDDDSMAGEDDDAVGGDEDGDNQVVPWSSTPPPPSASYSSSEESANRCNNSDRDISETGTMISLKRRRENASDLMFQEGLNGWSSQQRHRTELTGEGAWLPVDGEGSSVEVEPLKDGKTTRAASHSVFTNESIQIFKRPRSARNGDTFEAV 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00543 255 MobiDBLite consensus disorder prediction 206 229 - -
Bva09g00543 255 CDD Bbox1_BBX-like 4 45 - -
Bva09g00543 255 PANTHER - 1 194 - -
Bva09g00543 255 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Bva09g00543 255 SMART bboxneu5 1 45 IPR000315 GO:0008270
Bva09g00543 255 MobiDBLite consensus disorder prediction 86 122 - -
Bva09g00543 255 MobiDBLite consensus disorder prediction 138 161 - -
Bva09g00543 255 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 194 - -
Bva09g00543 255 MobiDBLite consensus disorder prediction 78 161 - -
Bva09g00543 255 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00543 Bva-Chr9 2896157 2897296 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00543 2 138 C2C2-CO-like Transcription Factor Family AT4G27310 47.205 3.08e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva09g00543 zf-B_box 4.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00543 - - vvi:100252747 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00543 09 2896157 2897296 Bva07g02092 07 17853195 17854334 BWGD
Bva09g00543 09 2896157 2897296 Bva09g00543 09 2896157 2897296 ECH