Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00516 ATGGATCCTCTGTGTGAGTTTTGTGATGTGGCAAGAGCTGTGGTTTGCTGCAAACGGGATTCTGCCCGTCTCTGCTTGTATTGCGATGGCTGCGTGCATTCTGCCAATGCTTTGTCACGCAGGCATCCTCGTTCACTCCTCTGTGATAAGTGCAATTTTCAGCCTGCAACTGTCCGCTGCATGGATGATAAAATGTCTCTGTGTCAAGGCTGTGACTGGAACCATGCCTGCTCCGCATTGGGACACCGGCACCAGACATTGACTTGTTACACGGATTGTCCCACGTTGTCTGAGTTGTGTGGGATATGGTCTTCTGTTCTTGATACTACTACTTTGTCTGGTTTCGATAATGCTTGGGGATCAGTCAATACATTGCCTAAAAGTGACAGCTGCTCCACCAAGAGTTTGCAGGAACCGGGTAACGATGGCTCTTTTGGGTTGGTGACTGGCAAGTTGAATGATATAATAGAATCATCTGCTAAATATGAACCTTGGATGGGGCAATCTCCTTTGATTCCACCAAATCCAAGTTACATGCCATACTGCAGAGATCAACCATTATTACTTCCTCAAGAATCAAGCTTGCCTAAGATGCAAGAATGTCCTAATTTCAAGGATCTCGAAGGTCTTGGCCTCAACATAGATGATGTTCAGTTAAATTTTGATAGTAGTGATGAAATATTTGGCTGCTCTCAAGGTGCCAACAGATGCCAGCTTGAAGATGGAGGAATGGACTGTCTCTTAACGGAAAAGAACCTATCAGTTACAGAATCTAATGTTCTTCCTGAGAATGCCGTGGAgGCATCATCATCAGTCCAACAAGAACGTGTGCCTTTTCAGTCATCCACGGCTGGTGGAAACATCAATCTGGGATTTACTCAGGGTCAAGTTCATTCAAGCATTTCACTGTCATTATCAAACATCACTGGTGAAAGTAGTGCTACTGATTATCAAGACTCTGGTTTATCACCTGTATTTCTGACAGGTGATACCCCGTGGGAATCAAATTTGGAGCCTACATACCCACAAGCAAGGGACAAAGCTAAAATGAGATACAATGAGAAAAAGAACACTCGAACGTTTGGTAAACAAATACGATATGCATCTCGCAAAGCCCCAGCTGATACTAGAAAACGTGTGAAAGGTAGATTTGTCAAAGCAGGTGAAGCTTATGATTATGATCCCCTAGTGACAAGGAACTACTA 1205 0.439 MDPLCEFCDVARAVVCCKRDSARLCLYCDGCVHSANALSRRHPRSLLCDKCNFQPATVRCMDDKMSLCQGCDWNHACSALGHRHQTLTCYTDCPTLSELCGIWSSVLDTTTLSGFDNAWGSVNTLPKSDSCSTKSLQEPGNDGSFGLVTGKLNDIIESSAKYEPWMGQSPLIPPNPSYMPYCRDQPLLLPQESSLPKMQECPNFKDLEGLGLNIDDVQLNFDSSDEIFGCSQGANRCQLEDGGMDCLLTEKNLSVTESNVLPENAVEASSSVQQERVPFQSSTAGGNINLGFTQGQVHSSISLSLSNITGESSATDYQDSGLSPVFLTGDTPWESNLEPTYPQARDKAKMRYNEKKNTRTFGKQIRYASRKAPADTRKRVKGRFVKAGEAYDYDPLVTRNY 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00516 401 CDD Bbox1_BBX-like 4 47 - -
Bva09g00516 401 Pfam CCT motif 345 387 IPR010402 GO:0005515
Bva09g00516 401 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 11-RELATED 1 400 - -
Bva09g00516 401 CDD Bbox1_BBX-like 47 85 - -
Bva09g00516 401 ProSiteProfiles Zinc finger B-box type profile. 43 87 IPR000315 GO:0008270
Bva09g00516 401 ProSiteProfiles CCT domain profile. 345 387 IPR010402 GO:0005515
Bva09g00516 401 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 400 - -
Bva09g00516 401 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00516 Bva-Chr9 2734829 2737753 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00516 1 395 C2C2-CO-like Transcription Factor Family AT3G21880 42.579 8.14e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Bva09g00516 CCT 6.3e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00516 - - qsu:111996076 520.776
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00516 09 2734829 2737753 Bva09g00516 09 2734829 2737753 ECH