Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00503 ATGGAATTCGTCTTGATTACAAGGCACTGTCGCATGGTTATGATCAGGAAATTATTCCTCGTCGCATTTTGTCTGTGGATTCCAACGCAAGTTGTGGGTAGAACAGGAAATACAACTGTAAATGCTACTGTTCCTTCAAGACCAAGTGTTGTGAAAATTGGAGTTCTGTTTACTATTAATTCGGTCATTGGAAGATCCGCTAAACTAGCAATTTTGACTGCCGTTGATGATGTTAACTCTGATAAGAGCGTTCTCCCTGACACAAAACTGGAAGTTATTTTACATGATACAAACTGCAGTGGGTTTCTTGGAACAGTAGAAGCTCTGCAGTTTATGGAGGATGAAGTCATTGCTGCTATTGGTCCACAGTCGTCTGGAATAGCGCATGTCATCTCCCATGTGGTTAATGAACTCCATGTTCCACTTCTGTCATTTGGGGCAACTGATCCTACTCTCGCAGCGCTGCAGTACCCATATTTCCTCCGCACTACTCATAGTGATTCTTTTCAGATGTACGGAATTGCAGACTTGGTTGACTATTATGGATGGAGGGAAATCATTGCCATTTTTGTAGATGATGATAATGGAAGAGGTGGGATTTCTGTACTGGGGGATGCACTAGCAAAGAAGCGTGCCAAGATCACTTATAAGGCTGCCTTCAGCCCTGCAGCTTCCACAAATGATATCACTGACTTGTTAACTGGAGTGAACTTGATGGAATCACGGGTTTACGTTGTGCATGTCAATCCTGATACTGGTTTGAGAATTTTCTCTATTGCCAAGAAATTAGGGATGACGACAGCTGGCTATGTGTGGATTGCGACAGATTGGCTTCCTTCTGTGCTAGATTCATCAGAAAGAGTTAACCCTGACACAATGAACCTCATACAAGGGGTTGTTGCTCTTCGCCATCACACTCCTGATACTGAtctcaaaaagaattttatctcTAGGCTGAAAAGCCGAAAAGACAAGGAGACTACAAGCTTCAATTCCTATGCACTTTATGCATATGATTCTGTTTGGTTAGCTGCCCGTTCTTTCGATGTTTTCTTGAAGAATGGTGGAAATCTGTCTTTCACTAATGACCCTACGTTGCAACAAACAAATGGAAGCTCGTTGAACTTATCAACACTTCGTGCTTTTGTAGGTGGCCCAGAGTTTCTCCAAACAATCTTGACAACGAACTTCACTGGTGTAAGTGGTCAAATTCAATTTGGTATTGATAAGAATTTGGTTCATCCAGCATATGATATCCTAAATATTGGAGGATCTGGGTTTCGTATTGTTGGTTATTGGACTAATTACTCTGGTCTGTCAGTTGAGACTcctgaaattttatataagaaaCCTCCTAATACCTCAACGAGTAATCAAAAACTTTCTGGTGTGATATGGCCCGGAGGGATTTCTACTACACCTAGGGGATGGGTGTTCCCCTTCAATCAAAAGCCACTGCGCATAGCAGTTCCACACCGAGTAAGCTACCAGGAGTTTGTTGCCAAAGACAAGGACACGGGGGTAAAAGGTTATTGCATTGATGTCTTTGAAGCAGCCGTCAAGTTGTTGCCTTATGCAGTTCcactgaaatatatattatatggacATGGTGATAGAAATCCTGATTACAACGATCTTGTGAATCAGGTTGCACAAAATaACTTTGATGCAGCTGTTGGAGATATTACAATTGTTACAAATAGAACGAGGATTGTGGATTTTACTCAACCTTACAAGGAATCAGGGCTGGTTGTAGTTGTTCCCGTCAAGGAGATAAAGTCAAGCCCTTGGTCTTTCCTCAAGCCATTCACAGCTCAAATGTGGTGTGTCACCGGTgccttctttctctctgtgGGAGCTGTTGTATGGATTCTTGAGCACAGGATTAATCCTGAGTTCCGCGGTCCACCAAGGAAACAActtataacaatattttgGTTTAGTTTCTCAACCATGTTTTTCTCACACAGGGAGAACACTGTGAGTACTCTGGGAAGATTGTTGCTACTCATATGGCTTTTTGTGGTGTTAATCATCAATTCGAGTTACACAGCTAGTTTGACATCCATCCTCACAGTGCAACAACTGACATCACAAATTGAAGGAATTGACAGCCTGATATCAAGCTCTCAACCGATTGGAGTTCAAGATGGGTCATTCGCGAAGAAGTATCTGATAAATGAGCTCAATATAGCAGAGTCTAGGATTGTTACGTTGAAAAGTCAGCAAGAATATGTTGATGCCCTTCAACGTGGACCAAGAAATGGAGGGGTGGTAGCTATTGTTGATGAGCTTCCCTACATTGAGCTTTTCATGTCCAACACCAACTGCAAGTTCAGAACTGTAGGACAGGAGTTTACTAAAAGTGGATGGGGATTTGCATTTCAGAGGGACTCTCCCCTTGCCGTCGACTTGTCAACCACCATTCTCCAACTCTCCGAGAATGGTGACCTGCAGAAGATCCATGACAAATGGCTGATGAGAAATGATTGTGCTGCACAATTCAACGGTGTCGATTCAAACCAACTATCTCTCAAGAGTTTCTGGGGGCTTTTCCTTGTATGCGGGATAGCCTGTCTCCTTGCTTTGATTGCCTTCTCTATTAAGGTGTTCGGTCAATACATGAAATTCATCCCGGAGGATGAGGTGGTTGATGAGGAAGTCCCTCCAACCGGGCCCAGAAGAAAACTCCGAAGTTCTAGAAGCTTCAAGGACATCATCGATTTTGTAGACAGAAGGGAAGCAGATATCAAGGAGAAACTTCATAGCCAGAAGAAGAAACGCAGACGCAGCAGCATAGATGATCAACCCGGTTCATCCCCATACACTCCCTCTTCCTCTTG 2843 0.4193 MEFVLITRHCRMVMIRKLFLVAFCLWIPTQVVGRTGNTTVNATVPSRPSVVKIGVLFTINSVIGRSAKLAILTAVDDVNSDKSVLPDTKLEVILHDTNCSGFLGTVEALQFMEDEVIAAIGPQSSGIAHVISHVVNELHVPLLSFGATDPTLAALQYPYFLRTTHSDSFQMYGIADLVDYYGWREIIAIFVDDDNGRGGISVLGDALAKKRAKITYKAAFSPAASTNDITDLLTGVNLMESRVYVVHVNPDTGLRIFSIAKKLGMTTAGYVWIATDWLPSVLDSSERVNPDTMNLIQGVVALRHHTPDTDLKKNFISRLKSRKDKETTSFNSYALYAYDSVWLAARSFDVFLKNGGNLSFTNDPTLQQTNGSSLNLSTLRAFVGGPEFLQTILTTNFTGVSGQIQFGIDKNLVHPAYDILNIGGSGFRIVGYWTNYSGLSVETPEILYKKPPNTSTSNQKLSGVIWPGGISTTPRGWVFPFNQKPLRIAVPHRVSYQEFVAKDKDTGVKGYCIDVFEAAVKLLPYAVPLKYILYGHGDRNPDYNDLVNQVAQNNFDAAVGDITIVTNRTRIVDFTQPYKESGLVVVVPVKEIKSSPWSFLKPFTAQMWCVTGAFFLSVGAVVWILEHRINPEFRGPPRKQLITIFWFSFSTMFFSHRENTVSTLGRLLLLIWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSSQPIGVQDGSFAKKYLINELNIAESRIVTLKSQQEYVDALQRGPRNGGVVAIVDELPYIELFMSNTNCKFRTVGQEFTKSGWGFAFQRDSPLAVDLSTTILQLSENGDLQKIHDKWLMRNDCAAQFNGVDSNQLSLKSFWGLFLVCGIACLLALIAFSIKVFGQYMKFIPEDEVVDEEVPPTGPRRKLRSSRSFKDIIDFVDRREADIKEKLHSQKKKRRRSSIDDQPGSSPYTPSSS 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00503 947 Pfam Bacterial extracellular solute-binding proteins, family 3 495 826 IPR001638 -
Bva09g00503 947 Pfam Receptor family ligand binding region 68 423 IPR001828 -
Bva09g00503 947 MobiDBLite consensus disorder prediction 918 947 - -
Bva09g00503 947 SUPERFAMILY Periplasmic binding protein-like I 46 478 IPR028082 -
Bva09g00503 947 PANTHER GLUTAMATE RECEPTOR 3.4 42 924 - -
Bva09g00503 947 Gene3D - 69 414 - -
Bva09g00503 947 PIRSF IGluLR_plant 11 944 IPR017103 -
Bva09g00503 947 CDD GluR_Plant 484 826 - -
Bva09g00503 947 CDD PBP1_GABAb_receptor_plant 52 441 IPR044440 -
Bva09g00503 947 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 42 924 - -
Bva09g00503 947 SMART GluR_14 487 828 IPR001320 GO:0015276|GO:0016020
Bva09g00503 947 SUPERFAMILY Periplasmic binding protein-like II 463 828 - -
Bva09g00503 947 Gene3D - 480 595 - -
Bva09g00503 947 Gene3D - 166 439 - -
Bva09g00503 947 Gene3D - 596 718 - -
Bva09g00503 947 Pfam Ligand-gated ion channel 827 859 IPR001320 GO:0015276|GO:0016020
Bva09g00503 947 Gene3D - 719 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00503 Bva-Chr9 2656168 2661363 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00503 1 793 Ion Channels AT1G05200 64.552 0.0 1090
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00503 K05387 - gmx:100799912 1374.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00503 09 2656168 2661363 Bva09g00503 09 2656168 2661363 ECH