Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00496 ATGAACGGCCATGAGAGCTGTTTGGGCAACTCCACCACTGCAGATATGGGTGAGGAAGGGAAGCTGTCTCTCCGCCGCATATGTGGCTGCAAGGTGGCTTCGCCCAAACTCAAAAATGAATCTTCAAGTGACAGAGGCACAGTAGATCTTTGCCGCAAAACCGGTTCAAGCAGCAGAGGAAGAGGAGCTGAACAACTTCAAGGATCAAGGAGAAATCAGGGGACTTTAACCCATAGTCAGTTCATCGCTGAATCGGTGTATGGGAATTACAAGGATTCATTTGTTAGTGAGGCCAGTGGTCAGCCTTCTAGACAAAATGATATTGAGATGGGAGTGCAAGTTCAAAGGAGCAATTCTGATATGGGAATGGGAGCTTTTAATAAGCAGATTCAAGAAGCTGAGAAACAAGTTGATAAGCTGTCTGAGCTACTTAGAAAACTGAAGGATGCTAATGAGGAGTCCAAAACTGTCACGAAAGCATCTGCCATGAAAGCTAtcaagaagaagatggagaaaGATATTGATGAAGTTGGAAAGATTGCACGTAATGTCAAAGCAAAAATTGAAGCTATAAATAAAGATAACCTAGCCAATAGACAAAAGCCTGGTTGTGAGAAGGGAACTGGTATTGACAGAGCAAGGATGAATATGACAAATTCCTTGACAAAAAAGTTCAAGGATATAATGACAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAGGTTGTCGAAAGAAGAGTTATTACAGTCACGGGAACTAGACCTGATGATGAGACAATTGACAACCTGATAGAAACTGGAAACAGTGAGCAAATCTTCCAAAAGGCAATTCAAGAAATGGGCAGAGGCCAGGTGTTAAACACACtggaagaaattcaagaaaggCATGATGCTgttaaagaaatagaaaagaagctTTTTGATTTACACCAGaTTTACCTAGACATGGCTGTCTTAATTGATGCTCAAGGAGAAATTTTAGATAACATTGAAAGTCAGGTTAGCAATGCAGTCGATCATGTCCAGAGAGGGACAAGTGCACTTCAAACTGCTAAGAAACACCAGAAGAGTTCCCGAAAATGGATGTGCATTGCCATCATTATACTTTTGCTAATAGTAGCTGTAGTAGTTCTTGGTGTTCTTCGTCCTTGGAAGAATAGCTA 1175 0.3932 MNDLLADSFVSEASGQPSRQNDIEMGVQVQRSNSDMGMGAFNKQIQEAEKQVDKLSELLRKLKDANEESKTVTKASAMKAIKKKMEKDIDEVGKIARNVKAKIEAINKDNLANRQKPGCEKGTGIDRARMNMTNSLTKKFKDIMTEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDNLIETGNSEQIFQKAIQEMGRGQVLNTLEEIQERHDAVKEIEKKLFDLHQIYLDMAVLIDAQGEILDNIESQVSNAVDHVQRGTSALQTAKKHQKSSRKWMCIAIIILLLIVAVVVLGVLRPWKNS 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00496 306 PANTHER SYNTAXIN 4 299 IPR045242 -
Bva09g00496 306 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Bva09g00496 306 CDD SynN 38 195 IPR006011 GO:0016020
Bva09g00496 306 SMART SynN_4 33 159 IPR006011 GO:0016020
Bva09g00496 306 SMART tSNARE_6 203 270 IPR000727 -
Bva09g00496 306 Gene3D - 198 300 - -
Bva09g00496 306 MobiDBLite consensus disorder prediction 7 23 - -
Bva09g00496 306 MobiDBLite consensus disorder prediction 1 23 - -
Bva09g00496 306 CDD SNARE_syntaxin1-like 207 269 - -
Bva09g00496 306 Coils Coil 38 75 - -
Bva09g00496 306 Gene3D - 33 162 - -
Bva09g00496 306 Pfam Syntaxin 41 243 IPR006011 GO:0016020
Bva09g00496 306 Pfam SNARE domain 244 296 IPR000727 -
Bva09g00496 306 SUPERFAMILY t-snare proteins 35 263 IPR010989 GO:0016020|GO:0016192
Bva09g00496 306 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 4 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00496 Bva-Chr9 2622278 2625576 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00496 1 303 SNARE and Associated Proteins AT3G03800 62.046 1.01e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00496 K08486 - cit:102614892 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00496 09 2622278 2625576 Bva09g00496 09 2622278 2625576 ECH