Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva09g00490 ATGAGAGTCACTATTGTGACAAGGACAAGCCAACTTTTCATTGAAGTAGGCTCACGAGAAACTGttgttgaaattaaaaggaaaatagaacAAGTACTTAATGTCCCAGTGGCTTCACAAATCCTTTCAGTATCTGGGTGGGAATTACTGGATGGATTGGACATGGAAGATTACCCCATTGTGAGTGAAGGTACAAAAATTGACCTCACCATCAAACCAATGGAGCCACTGCCAAATCCAAACCATTTCAATAAAATCCAAATTGCAGTGAAATTTCCAGCTAGACAGATTAACATAGAGGTGGACAGAACAGACACTATTCGTAgcttaaaggaaaaaattcaCATCATTGATGGCACACCCATCAAAAGAATGACACTTTTCTTCTCGGGTAGGGAATTAGATGATGATTTTCGAAATCTGACAGAGTATGGCATACGTGAATGTTCTGAAATCATTGTGTTTCTCAAGGCCGTGAATCGGTCAAGAGATGAGCCTCCGTCAAGGAAGTTGAGTCTGGTGGTGCAAACTTCCTCTAGTTTGCTCAATGCAGCCACCATTCCATTGGAAATAAGAGATGCAAGCACTGTCAATGACTTAAAGCAGTTGCTGTTGAGCAGAAAAATTCTCCCACTTGATGACTACTTGTTTATACACAAGCAGAGAATCATGCGTGAGACTTGCAGCCTTAGATGGCATGGAGTCGAAAATGGTGACTGTCTCTATGTCTTTAAAGGCACAGTTAGTCGCAGTTG 755 0.396 MRVTIVTRTSQLFIEVGSRETVVEIKRKIEQVLNVPVASQILSVSGWELLDGLDMEDYPIVSEGTKIDLTIKPMEPLPNPNHFNKIQIAVKFPARQINIEVDRTDTIRSLKEKIHIIDGTPIKRMTLFFSGRELDDDFRNLTEYGIRECSEIIVFLKAVNRSRDEPPSRKLSLVVQTSSSLLNAATIPLEIRDASTVNDLKQLLLSRKILPLDDYLFIHKQRIMRETCSLRWHGVENGDCLYVFKGTVSRS 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva09g00490 251 Pfam Ubiquitin family 88 157 IPR000626 GO:0005515
Bva09g00490 251 Pfam Ubiquitin family 8 72 IPR000626 GO:0005515
Bva09g00490 251 Gene3D - 158 249 - -
Bva09g00490 251 SUPERFAMILY Ubiquitin-like 182 245 IPR029071 -
Bva09g00490 251 SUPERFAMILY Ubiquitin-like 84 166 IPR029071 -
Bva09g00490 251 Gene3D - 85 157 - -
Bva09g00490 251 CDD Ubl_ubiquitin_like 88 155 - -
Bva09g00490 251 ProSiteProfiles Ubiquitin domain profile. 171 243 IPR000626 GO:0005515
Bva09g00490 251 CDD Ubl_ubiquitin_like 186 244 - -
Bva09g00490 251 ProSiteProfiles Ubiquitin domain profile. 1 60 IPR000626 GO:0005515
Bva09g00490 251 Gene3D - 1 73 - -
Bva09g00490 251 SMART ubq_7 1 72 IPR000626 GO:0005515
Bva09g00490 251 SMART ubq_7 171 246 IPR000626 GO:0005515
Bva09g00490 251 SMART ubq_7 86 157 IPR000626 GO:0005515
Bva09g00490 251 SUPERFAMILY Ubiquitin-like 1 78 IPR029071 -
Bva09g00490 251 ProSiteProfiles Ubiquitin domain profile. 86 157 IPR000626 GO:0005515
Bva09g00490 251 PRINTS Ubiquitin signature 95 115 IPR019956 -
Bva09g00490 251 PRINTS Ubiquitin signature 116 136 IPR019956 -
Bva09g00490 251 PANTHER UBIQUITIN-LIKE SUPERFAMILY PROTEIN 1 251 - -
Bva09g00490 251 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva09g00490 Bva-Chr9 2603416 2604171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva09g00490 86 157 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 35.616 5.53e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva09g00490 - - lang:109342690 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva09g00490 09 2603416 2604171 Bva09g00490 09 2603416 2604171 ECH